G15289


Basic Information

Item Value
gene id G15289
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32971537 ~ 32983360 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20586
cttgttttatacatttaatataatttatttcactttaatcaCAAAATATACATTTGCACAATATATACAAGCACTGGGGACATGCTGAGATTCgaacaaatcaaacaaataaaaaaaacagacaaaagaacaaaacaacaataatgcCCAAGAAAGTGATCTTACAGATCTTACACAATATCTctcattatttctcattttcatagtgtattaaaatattgtaaagttCATAAActtattctattgtattctattctattctattcttatatttgttttctgctttgcttaaaaaaatcatatttaatttaaTCACTCCAACAACAGATAAAATTACTAAAACGTTCtgaaataagttaaataatctTAATATATTCTGATAGTGAGAAATATTACGTACATTGGATGAATTTGAGATAATAATCACAAAGATATAATGAATTTTTACACAAGTATTGTCTTTGCAAATAagctctgctctgattggctgctctgtTTGTGATGAAACACTTTTTATAACTTCATTGGActgctggttttaatgttatggctaattaATGTAAGTGTATTATGTAAGTGTTAAATAATTAGTTTGTGCTGGAACACTCAACTTCACAGTGTGAGTGGGAGGGGCTAGTCTGCtggttttaatgtaatggctgatcagtgtaagTTTATTAAAGTGGTTAATAATCTGTTTGTGATGAAACACTCTATATAACTTCAGTGTGAGCGGGAGGGGCTAATCTGTtggttatggctgatcagtgtaggCGTTAGTTTgcgtgtggtgatggtgtgGACTGCAGGGTGGAGGAGAAGCGTATGGTTTTGAAGTTCGGACACTGTTTACGCTGAACGTCGAATTCTTTAATTTCGAAAATGTTGGGACAGTTGAGTCCGTTCCTGGTCGAGCTCTTGAGGAACACAGGGTTTCGGTGAGCCGTTCTCTGCGTGGCGAACATCTGCTGACGGCGTATTCTCTGCGGCGTGGCCTGCGTCGccctcatcctcctcttcctcctgctcTTCATCACCACCATGGTGACGATGACCCCGGCTAGCATAGACACGCTAACGGTGAGACACGTCCCGAAGAAGAGGAGGGGCTTATACTCGGCGACGACGCCGCTACACAGCCAACAGGCCTTCGCCCTGTCGCTGAACTCGCACTCTGAGGTCATGGGGtcgccatcatcatcatcatcaggaAATCCCCGCTGGGAGACGATCTGTCGGTACAGAGCGACGGACGCTTTGGGCTGGGAATGGAGGTGGGAGGCGGTGAAGAAGCCGAAGTGAGAACTGTGATGATCCTGGAGGTTCCAGACGTAAAAGCCACGCAAGTCCACGCCGTCCAGCTCTCGCG
>TU20587
TAATAGCTTTATTTACAGATGAACTcgcttgcttttgtttttctgtttttattccgCAGGCGccgcttcttcttcttttgttcgGTGGGAATCCGTGATTCTCTCgactctcttcttttttttgtttgtctttttaaagtaatttccaGTCTTGATCGGTTGAGAATGCTACCTGtgaggagtggtgtgtgtgtgtgtgtgtgtgtgtttatctgactgactgaccacgatggtaaaaaaaaaaaaaaaagaaaggaaaaaaaaaaaagagcttccAAATCAAAAAGGTttgagtgcaaaaaaaaaaaaagtgggcaGAGTTTGACCAGAATCATGTGATCAGTCTGAGGAGGTGAGGATGAGTGGGTGGAGGAGTAGATAGATGAATGTGTAGAcagaagaacaaaagaaaggcACGTTACTTTAAAAGGAAAGGGTGaatcaagaaagaaagaaaaaaagaaataaaagagagagagagagtggctctgttcacacctggcattaccATTTGCATCCTGGGTGATCTGATCAATTGGCTAGCCATTGATTTTATTGCATCTCCTGTGAGGCTTGTAACTGGATTtctgatcacaagccatcaaaccaccaaactgaactgcttaaatttttgcaccaggagtaaagcagcataaagttatccaaaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20586 True 1369 lncRNA 0.41 2 32971537 32973457
TU20587 False 670 lncRNA 0.31 2 32982490 32983360

Neighbor

gene id symbol gene type direction distance location
LOC103028197 NA coding downstream 11697 32956131 ~ 32959840 (-)
LOC103029347 NA coding downstream 27944 32921025 ~ 32943593 (-)
LOC103029668 NA coding downstream 106200 32860683 ~ 32865337 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding downstream 113242 32834496 ~ 32858295 (-)
LOC103031569 NA coding downstream 220772 32734285 ~ 32750765 (-)
LOC103027351 LOC108434533,LOC105893001 coding upstream 52489 33035849 ~ 33073381 (-)
kiaa0141 NA coding upstream 91773 33075133 ~ 33084176 (-)
nudt6 nudt6,LOC107690594 coding upstream 109505 33092865 ~ 33101606 (-)
ankrd50 ankrd50 coding upstream 317873 33301233 ~ 33348173 (-)
LOC103022214 NA coding upstream 915498 33898858 ~ 33909077 (-)
G15276 NA non-coding downstream 57971 32912229 ~ 32913566 (-)
G15273 NA non-coding downstream 59408 32897427 ~ 32912129 (-)
G15272 NA non-coding downstream 63402 32906029 ~ 32908135 (-)
G15249 NA non-coding downstream 175707 32795378 ~ 32795830 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding downstream 177195 32784189 ~ 32794342 (-)
G15300 NA non-coding upstream 30010 33013370 ~ 33023936 (-)
G15302 NA non-coding upstream 32905 33016265 ~ 33018552 (-)
G15303 NA non-coding upstream 35752 33019112 ~ 33040395 (-)
G15290 NA non-coding upstream 49810 33033170 ~ 33066563 (-)
G15319 NA non-coding upstream 146608 33129968 ~ 33130342 (-)
hopx hopx,LOC107552340 other downstream 150733 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 811574 32122222 ~ 32159963 (-)
G14839 NA other downstream 1916034 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 2047450 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 2048288 30914910 ~ 30923249 (-)
G15497 NA other upstream 1151232 34134592 ~ 34136732 (-)
evc2 NA other upstream 1168463 34151823 ~ 34172017 (-)
G15498 NA other upstream 1257966 34241326 ~ 34242318 (-)

Expression


Co-expression Network