G15290


Basic Information

Item Value
gene id G15290
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33033170 ~ 33066563 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20593
catattcataaagttttaagagttcagaaatcaatatttggtggaataaccctggttggtttttaatcacagtttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgatttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcacccgtcttcctcttgattatattccagaggttttcgggtttggtaaaatcaaagaaaatcataatttttaagtgctctcttatttttttccagagctgtagtatagtgtgtacaTATTTAGAGCGTTTATCATTTTGATTTTTAGCGGCTATTAAAGCAAGGCGTCCAGTTCGGGCCATAAATCAGGCGTGTGACAAAAATTCCCCACATTTTCATATCATTTGCATAAATTTGCATAGTGCTTGCATATACAGCAATTTGGTCAGCAGGTTTTGAGGgcttgaattattatttttaataacagaagCCCAGTTTTCCCCAAAAGAGTCTCATAAGcatttggagagagagagagagagagcacagtgtgATGCTCACTCAaccattaaatgtggatgtgatttctgtgcatcatgagcacactgaccagcATTCagtcaacctcactcacaagataacacctcacaacgtatacagGTATGGTCAGGTCAAAACCATGTTAGCTTGGCTTTAGTATCCGTGTGAAAAGAGAATCTGAGAGACTGAAAATAATGGCTGCGTCCCAAATCGCACACTACCATTACCATTAATCAGATTAtagcatgctaatgctacatgctaatgctaacactagCAGTTAATACAACCTAGCGGTCACCAGTTAGCAGCAGTTAATGCAGCATTAAGTGGGAATTGGCCTCTTTTACTCATCGGCTCCCCCTGTAGATGGCAAGTGGAATTACACCACTTTTACACCACTACTgtaaatacaaattattatttttttatcaagcaACACATTTAACGAATATACACTGATATTCCAAAATTCATGGGACATGACTTGATTatgttgtcccatgacttttgctatgTCCAATATCTTGAtgtcctgcattgaatgtgtaTCTGGATTTATGCTAGTCACTAGtctctgtttgcatggacaaatCTAACCAGATGCTGTCAGCCACCATCCTTACCTACCATTGTGTGGAACATAGGTATAATCTGTATacgttatgaggtgttatcttgtgagtgaggacAACACAATCACCACAACCTGCTGGTTTGCTTTAAACGATGCTGTTTAAGACCATTGATTTCCAATCACTGTTAGCCACGTTAGCATAAGTTTTTCACTTGTGTTTCATGACTTAAccattacttttattataaaaacGCCTCACAGCGAGTCTGAAAGGAAGCTAAAAACCATATTTAAGATTTTATAAGTGGGGTGTGTGTGAATCTGGccctgatctgatctgatataAGTTTATTTGACTGGAGGCTCACGGTTCCTGTAAACACgctgtgtttatgaatgcaGGCCGCAGGCTACGTCTGAACGCTAAAGCTAACTCCACTTTGATGTAGCTGGTGCTATGGattacacgcacacacacacatacacacacacacacacagaagctaTACAGTAATACGGCTTCTCATTATGAATGATGTTTTGAACACATAAGCTACGAATCCTCActctcagacagacagatagacagacagacagacacaccgactgacacacacacactctgtcagTGTTTATCTGGGGGTGAACAGCACTCACAGACCCAGGGAGAATGCCAGTGAAAGTGTAAGCTGCAAaactacacactaaaaaaaaagaggaatgtgttttttttaatccatgtaAACGAAGCTGAACTCACCTGTGTACCTCACAGAGATGTGACATCACTAATTTTTACACCATATTAATATGTCATCATGTCCCTGTGCAAAATAAAGGCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20593 True 1985 lncRNA 0.39 2 33033170 33066563

Neighbor

gene id symbol gene type direction distance location
LOC103028197 NA coding downstream 73330 32956131 ~ 32959840 (-)
LOC103029347 NA coding downstream 89577 32921025 ~ 32943593 (-)
LOC103029668 NA coding downstream 167833 32860683 ~ 32865337 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding downstream 174875 32834496 ~ 32858295 (-)
LOC103031569 NA coding downstream 282405 32734285 ~ 32750765 (-)
kiaa0141 NA coding upstream 8570 33075133 ~ 33084176 (-)
nudt6 nudt6,LOC107690594 coding upstream 26302 33092865 ~ 33101606 (-)
ankrd50 ankrd50 coding upstream 234670 33301233 ~ 33348173 (-)
LOC103022214 NA coding upstream 832295 33898858 ~ 33909077 (-)
LOC103031787 drd5,LOC107701828 coding upstream 972846 34039409 ~ 34041114 (-)
G15300 NA non-coding downstream 9234 33013370 ~ 33023936 (-)
G15302 NA non-coding downstream 14618 33016265 ~ 33018552 (-)
G15289 NA non-coding downstream 49810 32971537 ~ 32983360 (-)
G15276 NA non-coding downstream 119604 32912229 ~ 32913566 (-)
G15273 NA non-coding downstream 121041 32897427 ~ 32912129 (-)
G15319 NA non-coding upstream 63405 33129968 ~ 33130342 (-)
G15329 NA non-coding upstream 149845 33216408 ~ 33216763 (-)
G15330 NA non-coding upstream 152636 33219199 ~ 33219418 (-)
G15343 NA non-coding upstream 232099 33298662 ~ 33299321 (-)
G15363 NA non-coding upstream 434203 33500766 ~ 33501000 (-)
hopx hopx,LOC107552340 other downstream 212366 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 873207 32122222 ~ 32159963 (-)
G14839 NA other downstream 1977667 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 2109083 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 2109921 30914910 ~ 30923249 (-)
G15497 NA other upstream 1068029 34134592 ~ 34136732 (-)
evc2 NA other upstream 1085260 34151823 ~ 34172017 (-)
G15498 NA other upstream 1174763 34241326 ~ 34242318 (-)

Expression


Co-expression Network