CI01000009_09483061_09483927 (KCTD12.1, KCTD12)


Basic Information

Item Value
gene id CI01000009_09483061_09483927
gene name KCTD12.1, KCTD12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9481688 ~ 9484474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09483061_09483927.mRNA
AGAAGCAAAACATGAAAAACCACTCAGAAGAGTCCAGCAACTGCATAAAACAGGTTAACAACCACACAGAAAACCTTGGCTTTCCTGTGCGCTGCCCATTTTCTTCTACAGTTTGTGAAGATTGAGTCCCATAATTTCGACTTTCTACCACTAGATGCCACTACTCCTTCATCTTGAAGGGCATGGAAGAATATGTAAGTTACACTAATTTATTATGAGACCATTTGTGTGAGGAGATTTGTTTAGCCATATCCCTTTGATTTTCCCCATGTTATTATCTACATTTAAGTTTAAGTTCATATCTCTTAAAAATTTTGTTGCCTTTTGATAAGAGACATCAACAGTCAGTCAGTTTAGCATCTCCATCACTGACAGCAGGAGGCACGACACCAGTTGGTCCCATTTTGCCAATAAAGCGTTAACCTCAGCCGTCTTCTCTCCCCTCCCCTTCCACAGCACAACCTATTTAAACAAACATCTGCCCTTATCTGGAGTCTTTGGGAAACCCGTTGCACACATAACTGGCATCTTTAGTTGAAGAGACGTGATGGCTTTGGCAGATCCTGAGTGTGGAATATCAAACGGCGCGGATTCCGCGTCCCCGTTTTCTGACATTATTGAACTAAATGTTGGTGGACAAGTGTATGTGACACGGCATACGACTTTAATAGCCGTACCGGATTCTCTCCTGTGGAACATGTTTAGTAAGAAAAAACCGACAGAACTGGCACGGGACAGCAAAGGTCGCTTTTTTCTCGACAGGGACGGCTTTCTTTTTCGCTACATTTTAGACTACCTACGGGATCTACATCTGGTTTTGCCTGACTATTTTCCGGAAAAGAGCAGATTACAGCGGGAGGCTCAGTTTTTTCAGCTGCGGGACCTGTCCAAGCTCTTGAGCCCCAAAATGAGTAAAGACAACTCCATCACCGATGAGATCTGTCAGAGTGACTCGGAGGAGTTGAGCGCGAGCGCGACCCCGTTGGTCGGACCCGACACCTCGCGCACGCTGTCCGTCCCCAGCACCGCTCATTCTCCTTCTCTGGAGTCCAAAAAGTCAGGCTACATCACAGTCGGTTACCGGGGCTCGTATACAATCGGAAGAGACATACAAACAGACGCCAAATTCAGGCGGGTCGCGAGGATCACGGTGTGCGGGAAGACTTCTCTGGCTAAGGAGGTGTTTGGAGACACTTTGAACGAGAGCAGAGACCCGGACCGACCTCCGGAGAGGTACACATCACGCTATTATCTGAAATATAATTTTCTCGAGCAGGCGTTTGACAAACTGTCAGAGTTTGGCTTCCATATGGTCGCGTGCAGCTCCACTGGCACGTGCGCTTATTCCAGCAATGACCCAAACGAGGACAAAATCTGGACAAGCTACACAGAGTATGTTTTCTGTCGAGAATGAGACATAATTTGTTGCATTTAATTGTGTGTATAGGCATTCTACAAGAGTAAAGTTTCATCCGTCTTTCAGAGGTGTACAGTATAGGTTTGCCTCATTCACAGACACCAGACAAAGTTGTTTGCATCATAGTACTGGATGTTTACTCTTAGTCTTTTATAGCCTATACATGTCTTGCTAGAGTTAACGAACGCAGAATAACCAGCTATCATTACACTTCCCTTCATAGCTTCATTTTGTTTGCAGATAGGCTAAAGTCGTTTCTTAATCCAGATTTGAGAGCCTGTTTGTCCCAGATGCGTTACTTGCTATTCTTTATGCATGTATTTTAAATGAACACGTGAAATATTGCTTCATTCACCATGGCACAGAGACCAGATTTGTAAGTTAGGCTATAAGATTTTGATGAATGTGCATAATGGTATTATACTGGGTCAATGATTTAACGGACAGTTCCACTTTCAGGAAATGTCGATTATTTAATCATTAGGCAACATTCTGGAAAGACAGCTTCCTTTCATCAGCCTGGTATATCTCAGTGACACTTTCCCTTTATAAGCTCAGTTTTATCTTTTCACTGTGAACAAGTAACCCTCTAAAACGGAAAACGTAAGTTTAATTGCTGCCTTATTTTTTTTTATTATTATTATTGTTTGTAAAATTAAAGTGGTGCCAAAGTTACCTGCAGTGATTTATTGCACTTTTTTGACCAGTTTTAATTTCATTACAGATTAAGAAAATCGAGTGGAAAAAATAAAAAAAATAAAGAAATTTGTAATATATTAAATGGATGGAAACAAATATATTACAACATTTTACAACTGTACTATTGTATTAAATTTTGCACACTTTTTTTTTTGTTTGGGCAAAGAGTGGGAATAGTTTCTATTTTCTTTTTTGTCTAAAGGTTTCTATGTCTATATTACAACAGTGTTCCCTTTTATTCCAACATTGTAAACATCTTCTATCTGTTGTCTTTTCAAAGAGTCAATAATTTAATAAATTATAATCTGTCATAATCTTTCAGCCTCAGTCAGATTTCTGTTTGTTTTAAGTGTGTCTTGTGCATCTCTAAAGGCTGGAGGGCTAAACAACCTAAGCAAGAACGTGTTACCAGCTGCTGAACAACCCAGATTTATTCTTCTGTTTGGTGCAAATGCATCCCATGCTTTAAGTGCATTTTATTTTTAAAATACCTTTTTGTGGCATGGAAATCGAAATTGGATCACTGGAAAAATGTTTGAAGTTAAATATTAAAATTGTTCTAGCAATAACACTAATCTTTCATTTTTAGCATAACTTCATCTAAACTCTTCAAGCAATGATAGAGATTCAGGGAGAAAAGGAATTACATGGAAATAACTGGGATTAATAAA

Function

symbol description
kctd12.1 Acts upstream of or within habenula development and regulation of dendrite morphogenesis. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in nervous system and notochord. Orthologous to human KCTD12 (potassium channel tetramerization domain containing 12).
kctd12 Enables identical protein binding activity. Predicted to be involved in protein homooligomerization. Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway. Predicted to be located in cell projection. Predicted to be part of receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane.

NR:

description
Kctd12.2 protein, partial

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09483061_09483927.mRNA True 2787 mRNA 0.40 1 9481688 9484474

Neighbor

gene id symbol gene type direction distance location
CI01000009_09383289_09389713 NA coding downstream 91975 9383289 ~ 9389713 (-)
CI01000009_09380339_09381069 NA coding downstream 100619 9380286 ~ 9381069 (-)
CI01000009_09378166_09378781 CRYGM7 coding downstream 102907 9378110 ~ 9378781 (-)
CI01000009_09375453_09376121 NA coding downstream 105567 9375181 ~ 9376121 (-)
CI01000009_09373830_09374425 CRYGM6 coding downstream 107263 9373830 ~ 9374425 (-)
CI01000009_09494831_09498396 NA coding upstream 10278 9494752 ~ 9498396 (-)
CI01000009_09502714_09505047 TXNDC9, TXNDC9.S coding upstream 18199 9502673 ~ 9505047 (-)
CI01000009_09507352_09522340 REV1 coding upstream 22654 9507128 ~ 9522340 (-)
CI01000009_09565012_09566010 SOX1A, SOX1B, SOX1 coding upstream 79972 9564446 ~ 9568007 (-)
CI01000009_09644689_09665350 ARHGEF7, ARHGEF7A coding upstream 158842 9643316 ~ 9665830 (-)
G57106 NA non-coding downstream 6017 9475450 ~ 9475671 (-)
G57097 NA non-coding downstream 21602 9459857 ~ 9460086 (-)
G57020 NA non-coding downstream 34472 9440245 ~ 9447216 (-)
G57077 NA non-coding downstream 84787 9396295 ~ 9396901 (-)
G57068 NA non-coding downstream 221209 9260261 ~ 9260479 (-)
G57111 NA non-coding upstream 3844 9488318 ~ 9488539 (-)
G57114 NA non-coding upstream 73165 9557639 ~ 9569659 (-)
G57176 NA non-coding upstream 269274 9753748 ~ 9754109 (-)
G57179 NA non-coding upstream 282300 9766774 ~ 9769132 (-)
G57180 NA non-coding upstream 287245 9771719 ~ 9772508 (-)
CI01000009_08858198_08860555 NA other downstream 621125 8856310 ~ 8860563 (-)
G55814 NA other downstream 1053676 8425821 ~ 8428012 (-)
G53515 NA other downstream 3976440 5502395 ~ 5505248 (-)
G52828 NA other downstream 5250219 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 6219731 3261038 ~ 3262843 (-)
G59097 NA other upstream 2803743 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 4490914 13975099 ~ 13978614 (-)
G59490 NA other upstream 4549090 14033564 ~ 14037873 (-)
G59811 NA other upstream 5377923 14862397 ~ 14887464 (-)
G59941 NA other upstream 5647630 15132104 ~ 15132503 (-)

Expression


Co-expression Network