G15451


Basic Information

Item Value
gene id G15451
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33828403 ~ 33888088 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20866
tctgaactcttaaaactttacgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttaattatttcaaatagttctcattttctgcgagAGGAATGTTGTCCAAGGCTATAGAAAAATTATAGATAAAGTAAGAGAGTTGATAATTAGTTGAGATGTTTCTTAACCATCGTCGTAATGTCAGTCCTGTcgttgtctgtctgcctgccacggACTCACTCCTCCGGACACTTCCCAGGATGCACTTGTGTGGAACTTCCTAGACATGCCTGATCAGGTGATGCTTCAGCATTCTAACTCGCCAACCTTCTATTCATACTCTCCTGGTCCTGTCTTTGTGTTATCAAccctttttttgtatatttgaccACCCTTTTTGCCTAGCCCTTTGTTGTTTGTTAGCTTTCCAGTTGCCGACCcacagtattttgtattttctgcTCACTCTGGTACAGTATGTTGCTTGATTCTGCTGACCTTTCATTactgaccttgcctgtccctgactattCCTATAGATTAACGTAAATGACACTATAATTTTAGGGTAAAGTTTGTTCTAATATTTGTGTTAAAGCAATAAatgcatattatattatttggaTATTATAATGtgcttaattttaatatatcttTGCAAGTTGGGCTGCTCTGGTGGTCagtcagctttttaaaaaatattatataatggtATAATGATAGTATGGATCCAGGCTGGGAGTTTATAGGGGgtaatactgtactgtaatttaactacagtgtaatacagatgaaaaaatacataaccgattaaatatatatatgttataacaataaaaaaactagaTCTGAGCATCTGATGATTATAACTGTAGATGGAGGTTCTGAACTATTTCCAAGGAATCAACAGAAGTGAAAAAGATCCCTGAAACTAATAAGAGTTCTGCCCACAGACGAGCCCACCTCCACCCCACAGTTctgcttcctctgctttaacatgctctgaatcagtttctctgattgtgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattacaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatgtctgaaacaacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagtgaGGTCATGTAGATTTAATGTATGAAAGATGATGTAATGTATTATCACGACAGGCCTATCTAGAGATCATCGTAATTTTTTTTCGTCCTTTTGCCTTCAGTTATTCAACACAGATGCTTAATTcagaaatgatttaatttacaaATCTTCATTATTCTCAGAAACTTCATTAACACAATGTCACCTGATTTCACTGGATCTTTCTATAATCcctacattaaatacattaaatcctTACAGCTTCTTCAAAACTTACAGCATCATTTAACagaaagggttttttttattggtctctggacaatatttttattgaccCATAATGTTAACGTTGCTGCACTaatataatcataatataatctaataatgtaattacacatattttaaacatcttttaaaagtttaattaatAAGAATTTTTGGAATGTCATTTaaagaaattataaattaaaccactaaaaaaaaa
>TU20868
tatatacagctctgtaaaaaatgaaggtcgcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattacaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatgtctgaaacaacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20866 True 1701 lncRNA 0.33 2 33883746 33888088
TU20868 False 281 lncRNA 0.36 2 33828403 33884487

Neighbor

gene id symbol gene type direction distance location
ankrd50 ankrd50 coding downstream 480230 33301233 ~ 33348173 (-)
nudt6 nudt6,LOC107690594 coding downstream 726797 33092865 ~ 33101606 (-)
kiaa0141 NA coding downstream 744227 33075133 ~ 33084176 (-)
LOC103027351 LOC108434533,LOC105893001 coding downstream 755022 33035849 ~ 33073381 (-)
LOC103028197 NA coding downstream 868563 32956131 ~ 32959840 (-)
LOC103022214 NA coding upstream 10770 33898858 ~ 33909077 (-)
LOC103031787 drd5,LOC107701828 coding upstream 151321 34039409 ~ 34041114 (-)
otop1 otop1 coding upstream 156423 34044511 ~ 34055572 (-)
tmem128 tmem128 coding upstream 169710 34057798 ~ 34065048 (-)
lyar NA coding upstream 183815 34071903 ~ 34078289 (-)
G15443 NA non-coding downstream 33703 33794414 ~ 33794700 (-)
G15367 NA non-coding downstream 232010 33596152 ~ 33596393 (-)
G15363 NA non-coding downstream 327403 33500766 ~ 33501000 (-)
G15343 NA non-coding downstream 529082 33298662 ~ 33299321 (-)
G15330 NA non-coding downstream 608985 33219199 ~ 33219418 (-)
G15454 NA non-coding upstream 35518 33923606 ~ 33924008 (-)
G15486 NA non-coding upstream 153634 34041722 ~ 34042359 (-)
LOC111194046 NA non-coding upstream 246498 34134586 ~ 34136689 (-)
G15509 NA non-coding upstream 269239 34157327 ~ 34158162 (-)
G15510 NA non-coding upstream 279454 34167542 ~ 34167902 (-)
hopx hopx,LOC107552340 other downstream 1007599 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 1668440 32122222 ~ 32159963 (-)
G14839 NA other downstream 2772900 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 2904316 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 2905154 30914910 ~ 30923249 (-)
G15497 NA other upstream 246504 34134592 ~ 34136732 (-)
evc2 NA other upstream 263735 34151823 ~ 34172017 (-)
G15498 NA other upstream 353238 34241326 ~ 34242318 (-)

Expression


Co-expression Network