G15512


Basic Information

Item Value
gene id G15512
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34174200 ~ 34175378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20953
GGGAACAGTACCGTGGGAGCAGCGCTGCAGCTCGTTGCTGACGGTTGTCTGCAGGTCACAGATCAGCCTCTCCATCTGACCAAACTCCAGCTGTCCGTCAGCCGTCAGCTCCTCCAATGACTGAGTAGTGAGCCTCAGTCTAAGCTCCACCTTCTGCTTCAGGAGAGTCATTTTGATTCTTAGCCAAACAGTTAGCTCCTCCCACCATTGCAGCCTATCACACAGCATCTGGAAAAACAGGATTAATAAAGTTAAATGGTGTTTATTAACAAGGCTAAATAACTGTGGCTCCTCCCCCAAACCTTTATAACAGAAGTCTGAATGTCCCCAAGCTGCTCCTCCACCAATAGGAGGCAGTGGATAAAGGAACGTGTCATTTCTTCTGCGATGTCATTTGGAACTCTGCTTTGAAGACGCTGAAAGAAATTCtccaactgcctagcaacacttacagcctgcacacacacacacacatacacacacacacacacatacacacacgtgaAGGGGACCGTGAGGTTGTGAAGAAAGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGCGGTCGACAGTGTGGGGAAGGTGCGTCACCGTATGTAGTGTGTGGTCCAGTTTCTCTCTGCCTGCTTTCTCCACTTCATCTATAGTGCAGAATACTGAGCCTAGCCCCGCCCCTTTCTCCCAGCTCAGCAGGTCAGGACACGCCCCTTTCTTCAGCTGCTCTGTTTTctacagagtaaaaaaaattaaaaaatgcctATCTTCACCGAACATTTaatacacactcgcacacactcgcacacacacacacctgctgcagctgctgaaagtcgGACTGTAGGGCGGCGCTCTCTCGGCTGAACAGAGCTCCGCCCACCTGCAGCAG
>TU20954
GGGAACAGTACCGTGGGAGCAGCGCTGCAGCTCGTTGCTGACGGTTGTCTGCAGGTCACAGATCAGCCTCTCCATCTGACCAAACTCCAGCTGTCCGTCAGCCGTCAGCTCCTCCAATGACTGAGTAGTGAGCCTCAGTCTAAGCTCCACCTTCTGCTTCAGGAGAGTCATTTTGATTCTTAGCCAAACAGTTAGCTCCTCCCACCATTGCAGCCTATCACACAGCATCTGGAAAAACAGGATTAATAAAGTTAAATGGTGTTTATTAACAAGGCTAAATAACTGTGGCTCCTCCCCCAAACCTTTATAACAGAAGTCTGAATGTCCCCAAGCTGCTCCTCCACCAATAGGAGGCAGTGGATAAAGGAACGTGTCATTTCTTCTGCGATGTCATTTGGAACTCTGCTTTGAAGACGCTGAAAGAAATTCtccaactgcctagcaacacttacagcctgcacacacacacacacatacacacacacacacacatacacacacgtgaAGGGGACCGTGAGGTTGTGAAGAAAGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGACAGTGTGGGGAAGGTGCGGTCGACAGTGTGGGGAAGGTGCGGTCGACAGTGTGGGGAAGGTGCGTCACCGTATGTAGTGTGTGGTCCAGTTTCTCTCTGCCTGCTTTCTCCACTTCATCTATAGTGCAGAATACTGAGCCTAGCCCCGCCCCTTTCTCCCAGCTCAGCAGGTCAGGACACGCCCCTTTCTTCAGCTGCTCTGTTTTctacagagtaaaaaaaattaaaaaatgcctATCTTCACCGAACATTTaatacacactcgcacacactcgcacacacacacacctgctgcagctgctgaaagtcgGACTGTAGGGCGGCGCTCTCTCGGCTGAACAGAGCTCCGCCCACCTGCAGCAG
>TU20956
GGGAACAGTACCGTGGGAGCAGCGCTGCAGCTCGTTGCTGACGGTTGTCTGCAGGTCACAGATCAGCCTCTCCATCTGACCAAACTCCAGCTGTCCGTCAGCCGTCAGCTCCTCCAATGACTGAGTAGTGAGCCTCAGTCTAAGCTCCACCTTCTGCTTCAGGAGAGTCATTTTGATTCTTAGCCAAACAGTTAGCTCCTCCCACCATTGCAGCCTATCACACAGCATCTGGAAAAACAGGATTAATAAAGTTAAATGGTGTTTATTAACAAGGCTAAATAACTGTGGCTCCTCCCCCAAACCTTTATAACAGAAGTCTGAATGTCCCCAAGCTGCTCCTCCACCAATAGGAGGCAGTGGATAAAGGAACGTGTCATTTCTTCTGCGATGTCATTTGGAACTCTGCTTTGAAGACGCTGAAAGAAATTCtccaactgcctagcaacacttacagcctgcacacacacacacacatacacacacacacacacatacacacacgtgaAGGGGACCGTGAGGTTGTGAAGAAAGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGCGGTCGATAGTGTGGGGAAGGTGGGGTCGATAGTGTGGGGAAGGTGCGGTCGACAGTGTGGGGAAGGTGCGTCACCGTATGTAGTGTGTGGTCCAGTTTCTCTCTGCCTGCTTTCTCCACTTCATCTATAGTGCAGAATACTGAGCCTAGCCCCGCCCCTTTCTCCCAGCTCAGCAGGTCAGGACACGCCCCTTTCTTCAGCTGCTCTGTTTTctacagagtaaaaaaaattaaaaaatgcctATCTTCACCGAACATTTaatacacactcgcacacactcgcacacacacacacctgctgcagctgctgaaagtcgGACTGTAGGGCGGCGCTCTCTCGGCTGAACAGAGCTCCGCCCACCTGCAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20953 False 1110 lncRNA 0.39 2 34174200 34175378
TU20954 True 1156 lncRNA 0.39 2 34174200 34175378
TU20956 False 1064 lncRNA 0.52 3 34174200 34175378

Neighbor

gene id symbol gene type direction distance location
cytl1 NA coding downstream 37628 34134586 ~ 34136572 (-)
stx18 stx18 coding downstream 70826 34090634 ~ 34103374 (-)
lyar NA coding downstream 95911 34071903 ~ 34078289 (-)
tmem128 tmem128 coding downstream 109152 34057798 ~ 34065048 (-)
otop1 otop1 coding downstream 118628 34044511 ~ 34055572 (-)
LOC103038859 NA coding upstream 10250 34185628 ~ 34190394 (-)
crmp1 NA coding upstream 15769 34191147 ~ 34198885 (-)
LOC103041332 NA coding upstream 38386 34213764 ~ 34216327 (-)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 44565 34219943 ~ 34228034 (-)
G15510 NA non-coding downstream 6298 34167542 ~ 34167902 (-)
G15509 NA non-coding downstream 16038 34157327 ~ 34158162 (-)
LOC111194046 NA non-coding downstream 37511 34134586 ~ 34136689 (-)
G15486 NA non-coding downstream 131841 34041722 ~ 34042359 (-)
G15454 NA non-coding downstream 250192 33923606 ~ 33924008 (-)
G15513 NA non-coding upstream 1823 34177201 ~ 34178567 (-)
G15516 NA non-coding upstream 19397 34194775 ~ 34195228 (-)
G15503 NA non-coding upstream 25630 34201008 ~ 34253713 (-)
G15499 NA non-coding upstream 28152 34203530 ~ 34243927 (-)
G15519 NA non-coding upstream 37485 34212863 ~ 34215296 (-)
evc2 NA other downstream 2183 34151823 ~ 34172017 (-)
G15497 NA other downstream 37468 34134592 ~ 34136732 (-)
hopx hopx,LOC107552340 other downstream 1353396 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 2014237 32122222 ~ 32159963 (-)
G14839 NA other downstream 3118697 31053764 ~ 31055503 (-)
G15498 NA other upstream 65948 34241326 ~ 34242318 (-)

Expression


Co-expression Network