CI01000009_09507352_09522340 (REV1)


Basic Information

Item Value
gene id CI01000009_09507352_09522340
gene name REV1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9507128 ~ 9522340 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09507352_09522340.mRNA
GTCCCTCAGTATGAGTCGAGATGGTTGGAGAAAGAAAGCCAGTGAAGATGATGGGTGGGGAGGACGGGGTGGTTACATGGCTGCAAAAATCTCTAAGCTTGAGGAGCAGTTTCAGAAGGATGCCCCGAGAGAGAAGCAGAAAGATGGAACATCCTCCTGTATCTTCAGCGGTGTGGCCATCTACGTCAATGGATATACAGTTCCCAGTGCAGATGAGCTGCGCAGACTGATGATGCTGCATGGCGGGCAGTTTCATGTCTATTACACTCGCTCCAAAACCACACATATCATTGCCACTAACCTGCCCAACAGCAAAATACAACAGCTCAGAGGAGAGAAAGTAGTGCGACCAGAGTGGATCACAGACAGTATAAAGGCAGGCCGCCAACTTTCATACATCCAGTATCAGCTCTATACCAAGCAGAAATGCTTGAGCTTTGCTGGTGTTTGTGCACAAGGAGGGCAGGATCCGTTATTTAGCCATGAACCACCCAAACCCAGTCCAAGCCACCCCCAGTCAGACAGTATCAAGCCCAGTCACACTCAAACCCTTTCTAAAGAAGTTCTCAAATCCACTCAAGCTAACCACACCGCTAACTTCACTGATCGAACCAATCACCAGTTGGACATCAGACTAAATGGTTCATATAGCATCATCTCTGAGAAGGATGTTGAGAGGCCTAGAGTTAATGGGATTCATGATGGAGATGATGATGACAATGCCTGTGCCCTTTTGCCAAGAGGCTCACAAGACACTTTGTTAACTAATGGCTATGTACACCCTGTGAATGGTGCCTTAAAGCCTCAGGACTCAGTTTCTTTTGCAGAACATCGCCCTCATGTTGTTGACACAGGGTCCCATCAGTCCCACCTCCCACAGGCTGGATGCAGGGACAGGGAGGAGCCCAGCTGCTCTTCTGCTGGATCAAAAGCAAATTCCCATCAGCCGTTCTTAATATCCACAGCCAGCCCTGCAAAGAAGCCTGATCCTCACAATATGCAAAAGGACCTCCATCCAGAACCAACATCTAATCCAGGAACTTCAGCTGCCACTCAGACAAGAGTTCGACTAAATGGGAGTTATCACATGACGCCTAACTCCTCCATCCTTGCAAACTCTAGTAACCAGCCAGGAAGGTCAACTGCGCAGGGAGCAGAGGCTGGAATAATATCCGAGTTCTTTTCACACTCAAGGCTGCATCATATTTCTACGTGGCGGAATGAGTTCTCTGAGTATGTGAACGCCCTGCAGAGCAGGCGGCGAGCAGCAGGAGGGGCTGTTTTTTCTGGAAAAGAGAAACTAAAGAAGATCAAAGCTAACTGCAGTTCAGGTTCCTTAATGGCTGCTCCTCAGGTGCGTCAGTCCTGTATTCTTCATGTGGATATGGACTGCTTCTTTGTATCCGTCGGGATCAGACATCGACCAGATCTCATAAGGAAACCGGTTGCGGTGACAAGTAACCGTGGTCCAGGCCGTGTTCCACAGCGACCTGGTGCAAATCCTCAGCTTGAGTTTCAATACTACGAGAGGAAACAGAAACAGTACAGAAAAGAGAAGACAGATGATGATCTTGAGATGACCCCATCTCCACAGTTTGATGAAGGTCCCAGTAATGGAGTGGATCTGGACCTGGCCGCCCTCTCTATGGCCGAGATTGCCTCTTGCAGTTATGAGGCCAGGCAGGCTGGTGTGCGAAACGGCATGTTCTTTGGTCGGGCTAAGCAGCTCTGCCCTGATCTGCAGTCTGTCCCGTATGACTTCCAGGCGTATAAAGAGGTGGCTCTGACTATGTATGAGACCCTGGCCAGTTACACTCATAACATTGAGGCACTAAGTTGTGACGAGGCCCTGGTGGACGCCACGGCTCTTCTGGTTGATCTGGGAGTTACTCCTGATGATCTGGCACGAGCCATCCGTGAAGATATAAGGGAGAAGACTGGTTGCTCTGCCTCAGTTGGAATGGGTTCCAACATCCTTCTTGCTCGGATGGCGACCCGTAAGGCCAAACCAAATGGACAGTACTTCCTCCGGTCAGAGGAAGTAGATGATTTTATCAGGGATCAACCTGTCTCCAGTTTGCCTGGTGTGGGTCGCTCAATGAACTCCAAGCTGACCTCCTTGGGAGTGAGTACCTGCGGTGACCTGCAGCAGTTGTCCATGTCTCGACTGCAAAGGGAGTTTGGGCCACGGACGGGACAGACGCTTTTTCGTTTTTGCAGGGGATTGGATGACAGGCCTGTTCGCAGTGAGAAGGAGAGAAAGTCTGTGTCTGCAGAGATGAACTACAACATTCGGTTCACACAGGTTGAAGAGGCGGAGTCTTTCCTCACTAACCTATCTATGGAGGTGCAGAAGAGGTTGGAGGGGGCAGGGCTTAGAGGTCGCCGGGTTACACTGAAGGTCATGATGCGGAAAGCAGGGGCTCCGATAGAGCCAGCCAAATATGGTGGTCATGGGATATGTGACAACTTTGCCAGGTCTGTTTTACTAGCTCAGCCCACAGACAATGGACAGCTGATTGCGGCAGAGGCCATTAAGCTATTCCATGCCATGAAGTTGCATGTGAAGGACATGAGGGGAGTAGGGCTGCAGGTGCAGCAGTTGGAGGGACCACATGCAGACCCATCAGGACAAGGGCCCTCTCGTGGTCGCTCGATCAAAGACCTGCTGCTGGCCAAACAGCCTGCACACAGCCCCAGGAAAGAGCCTCTTGCACAAGATGGTTTAACCAGTCCTTCCTCATCCAGAGCTTTCTCCTCCAATCAGGAGAGAGTTACTCCTCCATCATCACCACCCTCCACCATCTCAGATCCAATGCCTGGAACGAGTAAAGGAGATTTTCACCATCCACGCACCCCCAACCATGTTAGGGCAAGCCTAAACATCAGCATTGAGGTGCCATCTCCCTCTCAGGTGGACCCATCTGTTTTAGAAGCTTTACCTGTAGACATAAGGAAACAGGTGGAGCAGTCCTGGAGAGACAGAGAGGAGCAGCCAAGCACCTCATCACATCTCTCAAGCCCACCTCGAACCTCCTCTTCACCTCCAGCTTCATCGCTTGGCACCCTTGTACTGCAGCTCCCAAACCAGCCAGGTCAACCATGCACAACGGGCATTATACTAGAGCTCCCTGACTTCTCCCAGGTTGACCCAGATGTGTTTGCAGCACTTCCCAGAGAGCTTCAGGAAGAGCTGTGCTCTGCTTATAGAAACAAGGGAAACGCTCAAGCTCAAGGCACCACTTTGGAACAAAAAAACACATTTCCTCAACTAAAGCAGCCTGCAGTGGGGAAATTAAAGCGGCGCTACAAAAAGAAAAATGCTAGTCCTGCCAAAAAGGGTCCAAGTCCAATAAAAAAACTATTTCCTGGAAACAGCCCTGCCAAATCCAGCCCCTCCAAAATTCTTCCTCTGCCACTCAAACAACAAGGCCTCAAAACTGAAAATGTACAGTGCCCGTCCTCTCCGAGCACAGATGTCCCAGAGACATTGTCCAAATTAATTCCCCGCCCAGTCCCGACCCTAGCTGGAGCTTATGAATTCAGTGACATCAGAACTCTGCTTCATGAATGGGTCACTACTATCTCAGAACCAATGGAAGAGGACATTCTACAGGTGGTGAAGTACTGCACAGAACTCGTGGATGATAAAGACCTGGAGAAACTCTACCTTGTCATCAAATACATGAAGAGACTTATGCAGCAGTCCTCAGAGTCCGTATGGAGCATGGCCTTTGACTTCATCCTTGACAATGTGCAGGTAGTGGTACAGCAAACCTATGGTAGCACTCTGAAGATCACATAGGAGAACCGTCCTAACCTCAGTCACTGTGACATCAGCCCAGTCCTGCCACCTCATCATGATGTGTGAGAGAGACAACAAAACCGCTTGAGTGTGCCAGTCGTAGCATTGCTGTCCTTTTGTGAAATCTCCCAATCGAGCTTCTCTGAGAACACAGAGGACATCTGAGGATTACAAGATCAAGCCAATGATGATGAGGAACAGATGAGCATACCAGCTTCATTAAA

Function

symbol description
rev1 Predicted to enable DNA-directed DNA polymerase activity and deoxycytidyl transferase activity. Predicted to be involved in error-free translesion synthesis and error-prone translesion synthesis. Predicted to act upstream of or within DNA biosynthetic process and DNA repair. Predicted to be located in nucleus. Orthologous to human REV1 (REV1 DNA directed polymerase).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process

KEGG:

id description
K03515 REV1; DNA repair protein REV1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09507352_09522340.mRNA True 4029 mRNA 0.50 21 9507128 9522340

Neighbor

gene id symbol gene type direction distance location
CI01000009_09502714_09505047 TXNDC9, TXNDC9.S coding downstream 2081 9502673 ~ 9505047 (-)
CI01000009_09494831_09498396 NA coding downstream 8732 9494752 ~ 9498396 (-)
CI01000009_09483061_09483927 KCTD12.1, KCTD12 coding downstream 22654 9481688 ~ 9484474 (-)
CI01000009_09383289_09389713 NA coding downstream 117415 9383289 ~ 9389713 (-)
CI01000009_09380339_09381069 NA coding downstream 126059 9380286 ~ 9381069 (-)
CI01000009_09565012_09566010 SOX1A, SOX1B, SOX1 coding upstream 42106 9564446 ~ 9568007 (-)
CI01000009_09644689_09665350 ARHGEF7, ARHGEF7A coding upstream 120976 9643316 ~ 9665830 (-)
CI01000009_09747388_09751284 NA coding upstream 224629 9746969 ~ 9752056 (-)
CI01000009_09756032_09759196 CX30.3 coding upstream 232496 9754836 ~ 9759196 (-)
CI01000009_09764731_09769444 NA coding upstream 242252 9764592 ~ 9769444 (-)
G57111 NA non-coding downstream 18589 9488318 ~ 9488539 (-)
G57106 NA non-coding downstream 31457 9475450 ~ 9475671 (-)
G57097 NA non-coding downstream 47042 9459857 ~ 9460086 (-)
G57020 NA non-coding downstream 59912 9440245 ~ 9447216 (-)
G57077 NA non-coding downstream 110227 9396295 ~ 9396901 (-)
G57114 NA non-coding upstream 35299 9557639 ~ 9569659 (-)
G57176 NA non-coding upstream 231408 9753748 ~ 9754109 (-)
G57179 NA non-coding upstream 244434 9766774 ~ 9769132 (-)
G57180 NA non-coding upstream 249379 9771719 ~ 9772508 (-)
G57042 NA non-coding upstream 350998 9873338 ~ 9875717 (-)
CI01000009_08858198_08860555 NA other downstream 646565 8856310 ~ 8860563 (-)
G55814 NA other downstream 1079116 8425821 ~ 8428012 (-)
G53515 NA other downstream 4001880 5502395 ~ 5505248 (-)
G52828 NA other downstream 5275659 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 6245171 3261038 ~ 3262843 (-)
G59097 NA other upstream 2765877 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 4453048 13975099 ~ 13978614 (-)
G59490 NA other upstream 4511224 14033564 ~ 14037873 (-)
G59811 NA other upstream 5340057 14862397 ~ 14887464 (-)
G59941 NA other upstream 5609764 15132104 ~ 15132503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location