nkapd1 (LOC103031305)


Basic Information

Item Value
gene id nkapd1
gene name LOC103031305
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21544356 ~ 21549087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229377.3
TATAGAGTCTGTGATTGGGGGAGGAGAGCAGTAGAAGAAGAGCTGTGGGTTGttgtgaggagagagaggaagacgcCACGTTCACACTACTGAACCGGTTTTAAAGGGTTACCATGTCGAGAGTTCCTATGGGTAAAGTGTTGCTCCGAAATGTCATCAGACACACAGATGCCCACAACAAGATTCAGGAGGAGTCTGAGATGTGGAAGCTTCGGGACATGGAGAAACAGTCCTCTTCTTCTCAGGCCTCCAAGCCCAGATGGATGACCAGCAGCCATTTGTCCAGGAGCAGCATGCACTGTGACAGAGACATGGATGACTCAGAAGGATCAGCACGAGACAGGCTTGGTGAAAAGGGAGGTCTGTCTGAAAGAGACGAGCGAGAGGCTCGGTACTGGAGCCGGAAACTGTACGAGTTTGAAGCAAATGATCCAGACAGaTGGGGACATAGTGGATTTAAGGAGCTTTATCCTGAAGAGTTTCAATCTGATGGAGAGACTGGCCGCACTAAACcaagcaggaaaaaaaacaccaaggAAAAAATGTCTGCTGACAAACGAAAGAACTCCAAGAAATCCTCtaaaaggaagaagaaaaagaaaaagaggactGCAGGGTCAGACTCAGAGTCTGACAGCAGCGAATCAGACAGTGTGAAGAGGAAGCAAAAGAGGAAAAGCGGGAAAAGTAAACACAGTAGAAAGAAAAAGcacaaaaggaaaacaaaagagGAGGAGAGCAGCACGGACGATAGTAACTCGGACAGACGTGGAGAAATTACTCGCAGGAAAAGACGCAGAACTGCAGCGGACTCTCAGAAAGAGCCTGAcaggaagaagaggaaaaacTGGAAAGCGAATGAAGAGAAGTCAGAGGAGAGCTCTGAGgactgaatgtatttttttacacaatctAAAGAGTTTCTTATTGTCGAATCAGAGCGATTTATCCAGTTCACATCAAACCATTGCCCTGATCGATACCTCATTCAGTGGAAACttgattctttgatttttttttattttatttatttattttttttttactgaggaTGTTCTCAaatttttaatgatgttaaaatTTTATATCATACTGAGAATCATGGGTTCTCATTCTATTTTTTGTGTACGTTGTAATGAagatttcttacattttatattcaa

Function

NR:

description
uncharacterized protein C11orf57 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229377.3 True 1163 mRNA 0.43 6 21544356 21549087

Neighbor

gene id symbol gene type direction distance location
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 490501 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 584120 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 635549 20902276 ~ 20908807 (+)
LOC111193555 NA coding upstream 657889 20884548 ~ 20886467 (+)
LOC111193556 NA coding upstream 665325 20876909 ~ 20879031 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 25863 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 215871 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 295678 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 370131 21919218 ~ 21931304 (+)
ankk1 NA coding downstream 389302 21938389 ~ 21955844 (+)
G12379 NA non-coding upstream 12818 21500197 ~ 21531538 (+)
G12373 LOC108436499,LOC108436498 non-coding upstream 25123 21483113 ~ 21519233 (+)
G12370 NA non-coding upstream 69321 21472615 ~ 21475035 (+)
G12369 NA non-coding upstream 72363 21471007 ~ 21471993 (+)
G12328 NA non-coding upstream 217325 21326410 ~ 21327031 (+)
G12410 NA non-coding downstream 61085 21610172 ~ 21613000 (+)
G12414 sik2b,LOC108436519,LOC108277697,LOC107657230,LOC107717286 non-coding downstream 73541 21622628 ~ 21623561 (+)
G12421 NA non-coding downstream 99265 21648352 ~ 21648643 (+)
G12424 NA non-coding downstream 130753 21679840 ~ 21716389 (+)
G12428 NA non-coding downstream 136270 21685357 ~ 21685942 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 80707 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 554292 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 568079 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2099525 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4401008 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 751909 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 924565 22473652 ~ 22517780 (+)
G13067 NA other downstream 2304911 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3151755 24700842 ~ 24722676 (+)
G13237 NA other downstream 3306846 24855933 ~ 24857022 (+)

Expression


Co-expression Network