mrpl28 (mrpl28,LOC107659942)


Basic Information

Item Value
gene id mrpl28
gene name mrpl28,LOC107659942
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18266393 ~ 18274248 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231022.2
TCTACCTGTACGTCATCGGAAAGGGTGTCTGTGTCCTTGACCGGCATGTGTGCGCAGTGTGTGCGCTGTGAGTCTGTATGCTAACTGAGTGATGTAGGTGTTTAATTAAACTACATTACCTGAATTAAAGCTCAGAGCCGCGGTCTCAGTTTTTCGCCCACAATCTGAAAGAAAATGCCGCTACATAAGTATCCTCCGCGAATTTGGGAAGCCCTGAAGTTACAGAAGGGTATCTACTCTCGTCTACCTCAGCACTACCTCAAAACCTTACAGGACACGACCCCTTCCACCGCAGTGCACTGGAAACCTCTGGGGGTAAAATACAGAGCCAACCCCAAGACAGGCCAGCGGGAGAGAGTGCAGGACATCCCCATCCCCATTTATTACCCCCCAGAGTCCCAGGACGGCCTTTGGGGTGGAGAGGGCTGGATATCGGGTTTCAGATACGCCAATAATGACAAGCTCGCTGCGAAGGTGAAGAAGACCTGGAAACCTCAGCTCTTTAAGAAGGAGCTATATAGTGAAATCCTTGACCAGAAGTTCAACATCACGGTCACAGCTCGTACACTAGATCTTATTGATGCAGTTTATGGCTTTGACTTCTACATCCTTAAGACCCCAAAGCAGGATTTGCACTCCAAGTTCGGGATGGACCTAAAACGTGCAATGCTTCTCCGGTTAGCTCAGAAGGACACAGAGCTGTACCCGGACGATCCTGTACGAAGGGAGAAGATCTACAACAAATATAAGCAGTTTGAGATCCCAGCCGAGGAAGCAGAGTGGGTGGGGTTGAGTCTGGAGGAGGCTGTGGAAAAGCAGAGACAGCTGGAGCATAAGGATCCTGAGCCGCTGTACAAGAGCTGCGTGGAAGACCTTGTAAAGGACATCGCCATACAGAAACTCTCAGAGCCCACAGTTGTGGGAAAGAAGGACTGAGGAGAGGATCAGTGTAGAACCATCattcagtgtgtatatataaaatatctataaataaatttgagCTTTGCTTTTGCCTTTTTACTTTTCTATTGATGACCGTTACAATAATACATACTAGTGTTGTGTAAATATCAGACAGCTGAGCAGACAATAAAATTCATCATCCtcatattaaatagatatattgtatacttttGCCAGTAGATGGCAGAGACTTCTGTGTATTTCTGTGACCTCATTtgtgtgtaaagctgctttgtcaTTCTGGGCCTGGGCTTGTTTAAACAAGACAGAAGTCACAtcttccgtttttttttttttggtttgttagaTTTACAGTATGAAGTGAGATAAATTGCCTGTTGTAATTCAGGTTAAGTGTTACTCTAGTACACCATTAAAGACTGTTCTTTTA
>XM_015608588.2
GGAAAGGGTGTCTGTGTCCTTGACCGGCATGTGTGCGCAGTGTGTGCGCTGTGAGTCTGTATGCTAACTGAGTGATGTAGGTGTTTAATTAAACTACATTACCTGAATTAAAGCTCAGAGCCGCGGTCTCAGGTAGGTCAGTTTTTCGCCCACAATCTGAAAGAAAATGCCGCTACATAAGTATCCTCCGCGAATTTGGGAAGCCCTGAAGTTACAGAAGGGTATCTACTCTCGTCTACCTCAGCACTACCTCAAAACCTTACAGGACACGACCCCTTCCACCGCAGTGCACTGGAAACCTCTGGGGGTAAAATACAGAGCCAACCCCAAGACAGGCCAGCGGGAGAGAGTGCAGGACATCCCCATCCCCATTTATTACCCCCCAGAGTCCCAGGACGGCCTTTGGGGTGGAGAGGGCTGGATATCGGGTTTCAGATACGCCAATAATGACAAGCTCGCTGCGAAGGTGAAGAAGACCTGGAAACCTCAGCTCTTTAAGAAGGAGCTATATAGTGAAATCCTTGACCAGAAGTTCAACATCACGGTCACAGCTCGTACACTAGATCTTATTGATGCAGTTTATGGCTTTGACTTCTACATCCTTAAGACCCCAAAGCAGGATTTGCACTCCAAGTTCGGGATGGACCTAAAACGTGCAATGCTTCTCCGGTTAGCTCAGAAGGACACAGAGCTGTACCCGGACGATCCTGTACGAAGGGAGAAGATCTACAACAAATATAAGCAGTTTGAGATCCCAGCCGAGGAAGCAGAGTGGGTGGGGTTGAGTCTGGAGGAGGCTGTGGAAAAGCAGAGACAGCTGGAGCATAAGGATCCTGAGCCGCTGTACAAGAGCTGCGTGGAAGACCTTGTAAAGGACATCGCCATACAGAAACTCTCAGAGCCCACAGTTGTGGGAAAGAAGGACTGAGGAGAGGATCAGTGTAGAACCATCattcagtgtgtatatataaaatatctataaataaatttgagCTTTGCTTTTGCCTTTTTACTTTTCTATTGATGACCGTTACAATAATACATACTAGTGTTGTGTAAATATCAGACAGCTGAGCAGACAATAAAATTCATCATCCtcatattaaatagatatattgtatacttttGCCAGTAGATGGCAGAGACTTCTGTGTATTTCTGTGACCTCATTtgtgtgtaaagctgctttgtcaTTCTGGGCCTGGGCTTGTTTAAACAAGACAGAAGTCACAtcttccgtttttttttttttggtttgttagaTTTACAGTATGAAGTGAGATAAATTGCCTGTTGTAATTCAGGTTAAGTGTTACTCTAGTACACCATTAAAGACTGTTCTTTTA

Function

symbol description
mrpl28 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28).

NR:

description
PREDICTED: 39S ribosomal protein L28, mitochondrial

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02902 RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231022.2 True 1354 mRNA 0.45 6 18266393 18274248
XM_015608588.2 False 1346 mRNA 0.45 6 18266393 18274231

Neighbor

gene id symbol gene type direction distance location
mos mos coding downstream 27827 18237312 ~ 18238566 (-)
LOC111194212 NA coding downstream 37046 18226104 ~ 18229347 (-)
LOC111194274 NA coding downstream 169877 18095039 ~ 18096516 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding downstream 753443 17237374 ~ 17512950 (-)
LOC111194193 NA coding downstream 1198338 17066396 ~ 17068055 (-)
cul5 cul5,cul5a,LOC107714978,LOC107582587,LOC107554266 coding upstream 4910 18279158 ~ 18296062 (-)
itgae NA coding upstream 23308 18297556 ~ 18322614 (-)
tubd1 tubd1,LOC107581164 coding upstream 164892 18439140 ~ 18445800 (-)
LOC103040343 LOC108443348 coding upstream 339949 18614197 ~ 18632647 (-)
pou2af1 NA coding upstream 461153 18735401 ~ 18762753 (-)
G11449 NA non-coding downstream 19222 18246243 ~ 18247171 (-)
G11365 NA non-coding downstream 129206 18136907 ~ 18137187 (-)
G11362 NA non-coding downstream 143296 18122824 ~ 18123097 (-)
G11299 NA non-coding downstream 450522 17815640 ~ 17815871 (-)
G11297 NA non-coding downstream 491714 17774218 ~ 17774679 (-)
G11466 dhx40 non-coding upstream 76336 18350584 ~ 18351976 (-)
G11473 NA non-coding upstream 93605 18367853 ~ 18369340 (-)
G11481 NA non-coding upstream 112807 18387055 ~ 18404593 (-)
G11482 vmp1,LOC107582631,LOC107701424,LOC107554262 non-coding upstream 119986 18394234 ~ 18412893 (-)
G11484 NA non-coding upstream 140094 18414342 ~ 18434566 (-)
LOC103036671 LOC108427400 other downstream 1912559 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 2261674 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 2363960 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 2979658 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 2987956 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 834465 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 967508 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 1511733 19785981 ~ 19802323 (-)
G11917 NA other upstream 1724192 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 2700834 20975082 ~ 20975154 (-)

Expression


Co-expression Network