CI01000009_09747388_09751284


Basic Information

Item Value
gene id CI01000009_09747388_09751284
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9746969 ~ 9752056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09747388_09751284.mRNA
ATATTTGACTATATTTTCCCCTTTGATGTCCTGAAATTGGCTCTATCAGGGCCCTTCACACATCACTGTCCAGTCAACGCTTTCAACTGTTTTTGAACATTATAATGTCGATCTCAGCACATGCCTGCTGGGCAGTGAAGCGAACAGGTGAGAGAGAAAGAGACTGTGTTTGATTGTGGTGAAAAAGTGTGTGTACGAGTGTGTGTGTGTCAGTGGCTGGAGAGAAAGCGAGCCATAGAGAGTTTGCTTACACTGTGCATGCCAGGTTCACAGCAGCCGGTTAGAGAATTAAATAGTGAGGGGTCACGACATCCATAAGTTAATGTCAAACGTTTTTGGCAATGTGATATTTTTACTGTGATCATTGACAAGGCTGATTTGCTCGATTTTCCTAAACGTCATTTGATAAATTAGTGCGAGGTATTGGCAAGTGCTTCATCGGGGCTTACAGTTTGGATCTTATGCAGAAACGTGAAATGCTGTGTGAGTTCATGAGAGCTGAGCGTGTTTTTTTATAGGTTAATGTACCTTTAGCTGTGCCTGTTTGAACTTACTTTCACGGCACAGGCCTAGACAGACCGAGAAGATCCAAACCATCTCATGTACAGTGTAACATGTTATTTTGTTAACTAGTTCTGATGAATCCTCTCTGTTCCCCTCTTAACCCTTTTGCTCACCTGACTCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTTGGCTGCAGACTGTACTTTCTCTCTAGGCTAGAAATCGTGAAGCATGGGTGACTGGAGCTTTCTTGGGCGGCTCTTGGAGAATGCACAGGAACACTCGACTGTGATCGGCAAAGTCTGGCTGACGGTACTCTTCATTTTTAGGATTCTAGTGTTGGGAGCGGCGGCCGAGGAGGTCTGGGGCGATGAGCAGTCGGACTTTACCTGCAACACGCAGCAGCCCGGTTGCGAGAACGTCTGCTATGACGAGGCCTTCCCCATCTCCCACATCCGCTTCTGGGTGCTCCAAATCATCTTCGTGTCCACGCCGACGCTCATCTACCTGGGCCATGTCCTGCACATTGTTCGTATGGAGGAGAAGCGGAAAGAGCGCGAGGAGGAGCTGCGAAAGGCCAGCCGGCTCCAGGAGGAGAAAGAACTCCTGTATAGAAACGGAGGGGGAGGGGAGGCTGGTGGACGGGGTCAGTATTTCCTCTATGGTTTCCAGTTGCGGCCCCTGTATAAGTGTGCACGGTGGCCCTGCCCCAACACGGTGGACTGCTTCATTTCCCGGCCCACGGAAAAGACCATCTTCATCATATTTATGCTTGTGGTGGCTTGCGTGTCCCTTTTGCTGAATTTGTTAGAAATCTATCACCTCGGATGGAAGAAGGTCAAACAGGGCATGACCAACGAGTTCGCCCCCGAGCGTGAGTCGCTGCCCGACGCGAACGAAGCGGAGCCCGAGTCTCCCAGAACTGCGCCTCCTACCCTCAGCTACCCGCCAGACTACACGGAGGTGGCCGTGACCCGATGTACAATGCTTTTATTATCAGGTATATACTTCGGCAATCTATTTAAAGAGACAGACAGCCCTGAAATAGAAACGGCGTCAAAAGTCTCGTTTAATGTTATTGATGTTGTTGAGTGCTCTCAAGTGCAGGCCAGCTCACTAAAAAGGCTCCGTCACTGGCTATTAAAAAGATCAAGGCAGAACTTTCACAGAACTATGGGATCTTTGTAAAGGTTAGCATGCAATTAAATTCATTTTGTCATTTTTAACCAACCCTGAATTTAATTAGACAGTTTAAAAGTTAATGTCTCAAATCCTCATCAAGGCATTTATGCAATTTTATGCAATCCAGGCCAAAATCATCAAGAACAACACCATACTGAGAAACTAATCTGCAGGAAGCTTGAGCATGTCTCAACCGAAAACTTGCACTCGTTGACCTCTGACCTTTATGCTTATCAGTCCTCCACTTCAGATTCCTAGAGGGGAAGTGAGAATGAGACTGAATGATGAGGGACACTAAAATGACACATCGTCCCCACGATCCACACAGTCTGTGAGGGAACAGCAAGACCACACAGGCCATATTTGTTTATCACTCAGAGTGTTTCTAGAAGTCCCCACATGTAATTTGGATGTTGCAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09747388_09751284.mRNA True 2148 mRNA 0.47 4 9746969 9752056

Neighbor

gene id symbol gene type direction distance location
CI01000009_09644689_09665350 ARHGEF7, ARHGEF7A coding downstream 81139 9643316 ~ 9665830 (-)
CI01000009_09565012_09566010 SOX1A, SOX1B, SOX1 coding downstream 178962 9564446 ~ 9568007 (-)
CI01000009_09507352_09522340 REV1 coding downstream 224629 9507128 ~ 9522340 (-)
CI01000009_09502714_09505047 TXNDC9, TXNDC9.S coding downstream 241922 9502673 ~ 9505047 (-)
CI01000009_09494831_09498396 NA coding downstream 248573 9494752 ~ 9498396 (-)
CI01000009_09756032_09759196 CX30.3 coding upstream 2780 9754836 ~ 9759196 (-)
CI01000009_09764731_09769444 NA coding upstream 12536 9764592 ~ 9769444 (-)
CI01000009_09787635_09787950 N6AMT2, EEF1AKMT1 coding upstream 34066 9786122 ~ 9787950 (-)
CI01000009_09791141_09791496 NA coding upstream 39085 9791141 ~ 9791878 (-)
CI01000009_09792753_09812884 XPO4 coding upstream 39993 9792049 ~ 9813334 (-)
G57114 NA non-coding downstream 177310 9557639 ~ 9569659 (-)
G57111 NA non-coding downstream 258430 9488318 ~ 9488539 (-)
G57106 NA non-coding downstream 271298 9475450 ~ 9475671 (-)
G57097 NA non-coding downstream 286883 9459857 ~ 9460086 (-)
G57020 NA non-coding downstream 299753 9440245 ~ 9447216 (-)
G57176 NA non-coding upstream 1692 9753748 ~ 9754109 (-)
G57179 NA non-coding upstream 14718 9766774 ~ 9769132 (-)
G57180 NA non-coding upstream 19663 9771719 ~ 9772508 (-)
G57042 NA non-coding upstream 121282 9873338 ~ 9875717 (-)
CI01000009_09908895_09911939 HAO2, HAOX2 non-coding upstream 156744 9908583 ~ 9912038 (-)
CI01000009_08858198_08860555 NA other downstream 886406 8856310 ~ 8860563 (-)
G55814 NA other downstream 1318957 8425821 ~ 8428012 (-)
G53515 NA other downstream 4241721 5502395 ~ 5505248 (-)
G52828 NA other downstream 5515500 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 6485012 3261038 ~ 3262843 (-)
G59097 NA other upstream 2536161 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 4223332 13975099 ~ 13978614 (-)
G59490 NA other upstream 4281508 14033564 ~ 14037873 (-)
G59811 NA other upstream 5110341 14862397 ~ 14887464 (-)
G59941 NA other upstream 5380048 15132104 ~ 15132503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037085 gja3 coding NC_007120.7 CM002893.2 21407987 ~ 21409466 (+)
bowfin (Amia calva) AMCG00021101 NA coding CM030130.1 CM030130.1 3762081 ~ 3773308 (+)