LOC103044667 (LOC103044667,LOC108432054,LOC108432053)


Basic Information

Item Value
gene id LOC103044667
gene name LOC103044667,LOC108432054,LOC108432053
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 6383443 ~ 6394943 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234486.3
CGAGCAGCCGTTAAATTAGCCGTGCTGAGCTCAGTTCAGTGCAGATCAGTTCAGATCGGGTCAGAACCACTAACAGAACCGGAACCTGCAGTACCAGTCAGATCACCAGCAGGCGGAGCAGCAACACCAACATCTTCAGTACCATCAACAACAAACCCGcgagcagcagaagcagagaTGTGGCTCGCAGTCGGGCTGGTTGCCCTGGTTCTGGTCGTTTTACTGATCAAAAATGTGTTCGGTTCAGGCGGACCGAGCCCGTTTGATCACGACGCCCGGGAGCCGCTGAAACCGATGGTCCATGATCCTAAGGAGAAGaacaaagtgctgaaacaagGTTTTCTGGCCAGCAGAGTCCCCCAGAACCTCGATGCTATTGTTGTTGGCAGTGGAGTTGGTGGGCTGGGTGTTGCTGTTATGATGGCGAAGGTTGGAAAGAAGGTTTTGGTCCTTGAACAGCATGATCGTGCTGGAGGATGCTGCCACACCTTCATAGAGAAAGGCTTTGAGTTTGATGTTGGTATTCACTACATTGGTGACCTGCTGGAGAACGGGCCTTTGCGATGCATATCGGACCAATTGACCAATGGCCAGTTACAGTGGGACCCACTCGATAACCCATTTGATCAGGTGGTTCTTGGGCCCCCGGAGAACCGCCGCATTTACCCAATCTACAGTGGCAAACACCGCTTTGCCCAGGAGCTGAAGAAGTGCTTCCCAGGAGAGGAGAAGGCCATTGACGAATACATGAGATTGGCTAAGAAATGTAACTTTGGTGTGTGGATGATGGGTGTGTTGAAGTTTCTTCCCACTCCAATTGCCAAGCTCATGGTCTACACAGGGATCGTTAATCTTCTATCCTACTTTTTCCGCTATGGCACTCGCAGCCTGACTGAGGTGGTGAATGGCCTCACTGAGAATAAAGATCTTAGGGCCGTGCTCTGCTACATCTTTGGGACATATGgaaACATACCAAAGGATGCCAGTTTCTCCATGCACAGTCTGCTCGTGTGCCACTATCTGCCTGGCGCTTGGTACCCTAAGGGAGGGGCGAGCGAAATTGCCTACCACATGATCCCAATCATAGAGAAGGCTGGTGGAGCCGTTCTGGTCAGAGCTCCAGTCAACCGTATCCTCCTCAACGATGCTAAGGAGGCCATAGGGGTGAGTGTTATGAAGGGTCATGAGGAGGTGCACATTCACGCTCCCATGGTCATCTCGGATGCTGGAATCTACAACACCTACCAGAAGCTCCTGCCCAAAGAGGTGCAGGCAACATCAGCGATCCAGAAGCAGCTGAGTATGTTGAAACATGGAGAGGGTGGGCTCAGCATCTTCCTGGGACTTGATGGAACAAAAGAAGAGTTGGGTCTTGAAGCCAAAAACTACTGGATATTTACTGAGAACAACCTTGATGAGCTGATGGAGGGCTACACAAAAAAGGACAGAGAGCAAGGAATGAAGAATATACCTCTGGTTTTTATTGCCTCGCCATCTGCCAAAGACTCTACCTGGGAGGAGAGAATGCCTGGTAAATCCACGCTGACTATGGTGAGCTTTGCCCCCTACTCCTGGTTCGAGGAATGGAAAGATGACAAGGTGACCAACAGGTCAGCTGACTATAAGGAACTAAAGGAGAGTCTCATACAGTCCATTTTGGAAGTGGTGTATCAGCTGTACCCCAAGACCAAGGATAAGATCGAGTACATGGATGCAGGCACTCCCCTCACTAACCAGCACTACATAGCAGCTCCTAAAGGAGAGATCTATGGAGTTGACCACGGCACTGCTCGCTTCAGTTCGGAATACTGCATCTCCATGAGACCACAGACGCCCGTCAAGAATCTGTACCTCACAGGCCAAGATTTGTTCTCCTGTGGTTATGCTGGCGCCTTGGCTGGCGCAATGATCTGCGGCTCTACGATCCTCAACCGCAACCTGTACCTGGACGTCATGAAGCTCTGCAGGAAACGCAAATATGCTAAAAAGAAGCCCCAGTAATCAAACAACTCGCACTCACACACTGTGGAGCACTGCAACAGTGGAAAGATGCATTTGAATCCAGCTGAGCTTCAGTTCTGATTGGTGCCGTGGACCTTCAAACAAGTAAAAGGGAAGGGTgaagttgtattttttttttctagtataTTTATACTAGAACTCGCTAACTGACTGAAACTTTTATATGGAATGGAATCCACGTTATATAACCATaacataatgttttttaatattgaatTAGTGCTGCCTTACAAATTGTAACCAAACAAAAGGATTCCTGTATGTGCACTGTTTAATTACACACAAAGTGTGTGTATCAGAATTATGGCACTTTATTCCTTATGTAGGTAAACCTGCTACATACAATGTAATATTGTAGAACCTCAATAAATTTATCAGATTCCTGGTAGACTAGtcacatgtagaaaaaaaagtggttttctctctactccaaaTGTAGCGCACAAAGAATGCCTTTCCAATTTAACTGTTGAGTTCAAACCGGTCCTATTTAATACATAACGCTTAAGTCTGCAGAGCTGTGGTCTGAAATCAACCCAGTTTTGACACCTTTGgtacaaatgtacaaaacaatgtactcaaacacagaaaaccacacagcaatttatttacattaatctgcattaaaagtactcttccacatgttcggtgcaattacacattctgaCCAGAGAGGTATATagactgttgctttaattgTGTGTTTTATCTCCACTACACCTGATAATGAGTAAGAAGCTTTGAAGTAGCTGttatttctttacttctttGGAAATGCTTTGTTAGAATGACaagtgtgtgttgttttataatttaaatatgtacagtatggcCTAAACAAATATGATCTAAGCTTTTCAGTCATGGATGTTTGGGAATGTGCTGTGAGTGTTGCAGCGTGTTTATAACTGAggtatttttaaacacattcttTGTGCTGCAGTTACATAGAATTTACACTGTGCCTTgtggttgtttttgtttatttggcaGATTAATAAACTGTCTATTATGACTTTTATGTTGCTTTTACAAAAAGGAAATGTGTCGTCAGCTTTTCATGCAAAAAAGGCACGAGAGAGGGACATCTTTAACCATTTAGAAAATGAAGCAGTAAAAATTTAACTATATGCATGTCAAAGTTTGCACTAAACTTTTGTGTCGGTTTTGTACTGTCTTGCAGACTATATGAAGCTGCCTTTTAATGCTGA

Function

NR:

description
putative all-trans-retinol 13,14-reductase

GO: NA

KEGG:

id description
K09516 RETSAT; all-trans-retinol 13,14-reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234486.3 True 3233 mRNA 0.45 11 6383443 6394943

Neighbor

gene id symbol gene type direction distance location
LOC103042304 plcd3,plcd3a,LOC108432051,LOC107654535,LOC107581738,LOC107591554 coding upstream 47108 6281337 ~ 6336335 (+)
LOC111194160 NA coding upstream 103753 6278969 ~ 6279690 (+)
LOC103042622 LOC108432050 coding upstream 112301 6143092 ~ 6271142 (+)
nudt9 nudt9,LOC107690277,LOC107755585,LOC107729190,LOC107686995 coding upstream 330944 6044912 ~ 6052499 (+)
LOC111193176 LOC108259092,LOC107687002 coding upstream 485534 5895157 ~ 5897909 (+)
LOC107196803 NA coding downstream 6819 6401762 ~ 6411830 (+)
LOC103045761 NA coding downstream 30351 6425294 ~ 6481238 (+)
LOC103043121 NA coding downstream 367037 6761980 ~ 6805840 (+)
mpp3 mpp3 coding downstream 422128 6817071 ~ 6870404 (+)
LOC111193218 NA coding downstream 874186 7269129 ~ 7270384 (+)
G8355 NA non-coding upstream 287784 6093496 ~ 6095659 (+)
G8343 NA non-coding upstream 360536 6022351 ~ 6022907 (+)
G8333 NA non-coding upstream 386661 5993246 ~ 5996782 (+)
G8332 NA non-coding upstream 390252 5992705 ~ 5993191 (+)
G8330 NA non-coding upstream 391493 5990255 ~ 5991950 (+)
G8450 NA non-coding downstream 16964 6411907 ~ 6413096 (+)
G8451 NA non-coding downstream 19114 6414057 ~ 6415422 (+)
G8499 NA non-coding downstream 157916 6552859 ~ 6553169 (+)
G8501 NA non-coding downstream 159597 6554540 ~ 6554957 (+)
G8509 NA non-coding downstream 236838 6631781 ~ 6634390 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 6739 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 653943 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 1044354 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 1054576 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 1580942 4752796 ~ 4802501 (+)
LOC103045148 LOC108432039 other downstream 314142 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 2043843 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 2069173 8464116 ~ 8485936 (+)
G9074 NA other downstream 2200926 8595869 ~ 8596783 (+)
G9113 NA other downstream 2414758 8809701 ~ 8810467 (+)

Expression


Co-expression Network