ankrd54 (ankrd54)


Basic Information

Item Value
gene id ankrd54
gene name ankrd54
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11598303 ~ 11605494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234900.3
ggctaagagAAAACCAAGACCTGATTTGATTGGCTGCGTGCAGTGGGAAGTCAGAGCAATCGATGTGCTTGTTATTGGAGCGGGGCCCTGCTAGTGCTAACACGAAGCAGACGACATATTGGCCGTGGCACTGTATTGAACAGCGGATTGATCAATGTTTCTGTATTGATTCGCCGTAGGAAAGATAGTGAGGCgcttataatttataaatttataatttGATCAGAATAACTGGGATTTAGGCAGATAAAAGCCGTGGATAGatctaggttagctaggtaagctagctaactaactaggcTACAGATGCCATGCCCTGGTGAAGGGCTGTGGAGGGAAGGAAAACACACCGACAGTTCGCTCGCTAATGCGGGAAAAAGGCAGGTGATTTGTCGCTAAATGAGCTGGTGGTGAATATGGACAGCTGGAGTCCCGTAGCCGCggctgcagcagctgcagcagcttcCGACGACGAGCGCTCCAGCTCCGAGGGCGAGTACACGCCGAAAGACCCGGAGAAGAGGGAGGATGGGGCGCGGGTGGCCATGGGAGCCTCGCCGGCGTTTGGTTTCTCCAGCCTGGACACGCTGGGCGCCCTCAGGCTGCACAGGACCGGGCAGACCGCGGAGAAGAACCTGCGCTACCTGCACTCGCTGTGGAGCCCAGGGGCGCTGCTGCAGGCGGACGCGGGCGCGGCGAGCAAGCCGGGGAAGGTGACTTCGAGCCGGGCGAGGAGGATGGGGAGGCTCCGACGGAGCATGGGACCTATAGGAAAAGACCTTTACGcTGTGAAGAggctcagagaagcagccaacgGTAACGATATTGACACAGTTCGCAGACTGCTGCAAGACGGTATTGACCCATGTGCTGCAGATGACAAAGGAAGAACAGCCTTACATTTCTCCTCCTGCAATGGCAACGAGAGCATCGTTCAGCTCTTGCTAAGTTATGGCGCTGACCCAAACCAGAGAGACAGTCTTGGGAATACTCCACTGCATCTTGCTGCCTGTACCAACCATGTGCCTGTCATCACTACCTTACTAAGAGGAGGTGCTCGAGTAGATGCTTTGGACCGTGCCGGAAGGACCCCTCTACACCTCGCCCGCTCAAAACTCAACATCTTGCAGGAGGGAGAGTCACGAAGCTTGGAAACCTTGCGAGGAGAAGTCACTCAGATAATTCAGATGCTGCGGGAGTACCTGAATGTGATGGGTCAGAGTGAGGAGCGAGAGAGACTGGAGCATATTTCTACCCAGCTACAGCACACCCGCACTAAAGAACAGGTGGACGAGGTGACTGACTTACTGGCCAGtttcacatctctgagtttacAGATGCAGAACATGGGAGACAGGTAGAGAAGATGGATAGCAGCTTACTACAGAAAGCTGAATCATGTTTGGATTACAGATACCtgagatatttatttatgtgtgacCAAGTGCTATCATTTTCATGTTTTGGGCAGTCGGTGTATAAATAGTAGGACTAAATTTATTGCCTTCACACCATGTTGTCTcttggttgaaaaaaaaatgtatgcctTTCTGTTTTTAATTGCATGTTGGTCTGTTTCCAGTAATGACTGTTCACTGTAAGCCATTTTTGTAAGTGTTGGACCTGTACCAGAcagtgacaaaataaaaaaaaaatccttttttggTCTA

Function

symbol description
ankrd54 Predicted to be located in cytoplasm; midbody; and nucleus. Orthologous to human ANKRD54 (ankyrin repeat domain 54).

NR:

description
ankyrin repeat domain-containing protein 54-like isoform X2

GO:

id name namespace
GO:0030496 midbody cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K21442 ANKRD54; ankyrin repeat domain-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234900.3 True 1670 mRNA 0.51 8 11598303 11605494

Neighbor

gene id symbol gene type direction distance location
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding upstream 975 11586489 ~ 11597328 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 21463 11564449 ~ 11576840 (+)
gcat gcat,LOC107703894 coding upstream 35756 11555137 ~ 11562547 (+)
LOC103043560 LOC108432223,LOC107726800 coding upstream 122605 11441057 ~ 11475698 (+)
LOC103042933 atp5h,LOC103042933,LOC103361245,LOC107670447 coding upstream 254043 11338585 ~ 11344260 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding downstream 630 11606124 ~ 11622342 (+)
LOC103045592 NA coding downstream 18189 11623683 ~ 11631900 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding downstream 138918 11744412 ~ 11750209 (+)
LOC103023317 LOC108432209,LOC108260824 coding downstream 277237 11882731 ~ 11917275 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding downstream 338224 11943718 ~ 12070412 (+)
G9727 NA non-coding upstream 14144 11582551 ~ 11584159 (+)
G9708 NA non-coding upstream 49172 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 92413 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 99682 11495734 ~ 11498621 (+)
G9656 NA non-coding upstream 190069 11407983 ~ 11408234 (+)
G9730 NA non-coding downstream 15508 11621002 ~ 11621408 (+)
G9770 spc24 non-coding downstream 149569 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 232146 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 511523 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 546411 12151905 ~ 12198169 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 159971 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1568713 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 1986491 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2667298 8919829 ~ 8931005 (+)
G9113 NA other upstream 2787836 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 697033 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 922195 12527689 ~ 12600530 (+)
G10003 NA other downstream 1008197 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1168719 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1529107 13134601 ~ 13135118 (+)

Expression


Co-expression Network