CI01000009_09756032_09759196 (CX30.3)


Basic Information

Item Value
gene id CI01000009_09756032_09759196
gene name CX30.3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9754836 ~ 9759196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09756032_09759196.mRNA
GTATGGAAGACTATCTCCAGCGCTATAGTGAGGGCATGAAGAGGGTTCTTAATGCTTTTGGGCCTGTACCAGACTTTTCTGGAGAGCCAGCAGCTAGAATCATAAAAACAATCACTTCATCTCAGTCTCGAGACTACGAAGGAACTCCGCAAGTGAATTTACTAATTTTTATTCACCTGGGCGGATATATATCATGGATTTGGTCGGAATCATCTTGTAGACTAACAGCTGCCGAGACGGTCTGGGGAGATGAGCAGTCCGACTTCGTCTGTAACACACAACAGCCCGGCTGCAAAAACGTCTGCTACGACCACTTCTTTCCAGTCTCACATATTCGTTTCTGGTGCCTGCAGCTCATCTTTGTGTCTACACCGGCTTTGCTGGTGGCTATGCATGTGGCGTACCGCAAACGCAACGTAAAGAAAGGCCTTATGGCCAACCGTGGTGGCAGTGCCAAAGGGGACGACCTGGAGAGCCTGAAGAAGAGGCGTCTTCCCATTACTGGGCCGCTGTGGTGGACCTACACCTCCAGCCTGTTCTTTCGGCTCCTTTTCGAGGCCGGATTCATGTATGCACTGTATTATGTCTATGATGGGTTTCAGATGGCACGTCTTGTGAAGTGTGAGCAGTGGCCCTGTCCCAATAAAGTTGACTGCTTTATCTCACGACCAACAGAGAAGACAGTCTTCACCATTTTCATGGTGGGATCTTCTGCCATCTGCATTGTGCTCAATGTGGCTGAACTGGGCTACTTGATTGTCAAGGCATTGCTGAGGTGCTCAGCCAGATCCAAGGGGAGGCGCGCCTTTGTACACCAAGATAAAATATCCACAGAAAAGGCACTCTTACAGAACGAAAAGAACACAATGTTGCTGTCATCCGCTTCAGACTCTTCGACCAATAAGACTGCCTAAGATTATACCTACATCCAGTGACTCAATTCTACCATCATGGATGATAGTAGGCTCATAGACGACAGTGTTTTAATAGATTTTGTAGCTCGTTTTTGACAAGTTGCCCTGAGAGCAGGTTTATTCCAAAGCTGGCATTCCTCCCCCAAGCCAAAAGATGATTAGGGAGTATGGCACTGCATTGACTAAAAATTTGGGGGTTGTTGAATTTTATTTTCCACATTGCTCAGTAGCCTCAGTACTCTCTAATGGCATTAGAAAAGCCCAAGAGCGACTCCTAGTGGTCAGAAAAGGACAGAACGAAAAGAACAGAAGGCTGCTGTCATCCGCTTCGGACTCCTCGATCAAAAAGAATGTTTAAGACTATCCCAACATCCAGTGATTCAATTCTACCGTCATGGATGATGATAATAGGCTCGTAGATAACAGTGTTTTAACAGTATGTGATTTTTAGCTCGTTTTTGACAACCTGCGAGAACAGAACAAAATGGAGATCAGAGACCTTTGCACAAAATTGAATGTCCTGTTTCTGAGGGATCATTTACTGTTGTGTATTGTACATAAATGCTTCTCTTTATTTGGACTTTTACATGATTGAGTTTTGCTTTGTTTACTTGTTTTTATTTTTTGGCTCCTGTTACCCATCAACAGTTTTAGACTAGCAGTATAATTTAGAGAGTGTTTGTGTTTGTATGTTTTTATTTGTGCTTGTTTTGGTAAATGATTTGAATGTCTTCAACGACGGCACGTCTGTTTAGTTTTAAGCCGTTTCACAATATCCTTGCATTGACTCCTACCAGGGATTTCATATCAGCTTTACAGCAGTGCCTTATTGAGAACAAATAGGCTGTAGTCGCGTGAGAATGTTTAGTGGCGCGCCGCGTGCTCTTACGACATCTTGTCGGTCAATCTACCTGTTGACAGGTGAACAGACAAGATCTCGTACGTGGTTTCTCGCTTCGTCAGCTGTCCGTTATCTTCCGTTTAATTTTCCTCCTCTCTGAGTGGGTCTACAAGTCAGCGGTGAACAGTTTTGTTTTTAATTCTGTGATGTAACCGCTGAAATAATTGTTACCAAAGTGTCCACATGTGTTGATGGAATCTTAGCTGACCATTTTTGATTGTCAACTGGTTGTCAAATAAGTATGTTTCTTTCTCATTTTGGCTAACAACTTAACTTTTATATGAATCTTAATAAA

Function

symbol description
cx30.3 gap junction beta-4 protein

NR:

description
connexin 33.8

GO:

id name namespace
GO:0048839 inner ear development biological_process

KEGG:

id description
K07621 GJB2, CX26; gap junction beta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09756032_09759196.mRNA True 2110 mRNA 0.43 3 9754836 9759196

Neighbor

gene id symbol gene type direction distance location
CI01000009_09747388_09751284 NA coding downstream 2780 9746969 ~ 9752056 (-)
CI01000009_09644689_09665350 ARHGEF7, ARHGEF7A coding downstream 89006 9643316 ~ 9665830 (-)
CI01000009_09565012_09566010 SOX1A, SOX1B, SOX1 coding downstream 186829 9564446 ~ 9568007 (-)
CI01000009_09507352_09522340 REV1 coding downstream 232496 9507128 ~ 9522340 (-)
CI01000009_09502714_09505047 TXNDC9, TXNDC9.S coding downstream 249789 9502673 ~ 9505047 (-)
CI01000009_09764731_09769444 NA coding upstream 5396 9764592 ~ 9769444 (-)
CI01000009_09787635_09787950 N6AMT2, EEF1AKMT1 coding upstream 26926 9786122 ~ 9787950 (-)
CI01000009_09791141_09791496 NA coding upstream 31945 9791141 ~ 9791878 (-)
CI01000009_09792753_09812884 XPO4 coding upstream 32853 9792049 ~ 9813334 (-)
CI01000009_09817498_09826525 NA coding upstream 58051 9817247 ~ 9826525 (-)
G57176 NA non-coding downstream 727 9753748 ~ 9754109 (-)
G57114 NA non-coding downstream 185177 9557639 ~ 9569659 (-)
G57111 NA non-coding downstream 266297 9488318 ~ 9488539 (-)
G57106 NA non-coding downstream 279165 9475450 ~ 9475671 (-)
G57097 NA non-coding downstream 294750 9459857 ~ 9460086 (-)
G57179 NA non-coding upstream 7578 9766774 ~ 9769132 (-)
G57180 NA non-coding upstream 12523 9771719 ~ 9772508 (-)
G57042 NA non-coding upstream 114142 9873338 ~ 9875717 (-)
CI01000009_09908895_09911939 HAO2, HAOX2 non-coding upstream 149604 9908583 ~ 9912038 (-)
G57189 NA non-coding upstream 155992 9915188 ~ 9915459 (-)
CI01000009_08858198_08860555 NA other downstream 894273 8856310 ~ 8860563 (-)
G55814 NA other downstream 1326824 8425821 ~ 8428012 (-)
G53515 NA other downstream 4249588 5502395 ~ 5505248 (-)
G52828 NA other downstream 5523367 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 6492879 3261038 ~ 3262843 (-)
G59097 NA other upstream 2529021 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 4216192 13975099 ~ 13978614 (-)
G59490 NA other upstream 4274368 14033564 ~ 14037873 (-)
G59811 NA other upstream 5103201 14862397 ~ 14887464 (-)
G59941 NA other upstream 5372908 15132104 ~ 15132503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location