rnf169 (rnf169)


Basic Information

Item Value
gene id rnf169
gene name rnf169
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25062687 ~ 25072518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236780.3
cgTCCTGCTCCCCTGATGCAAAAAAACTGGGCGGGGTTTGTTTTCAAACCGAGCAGTGAGATACCAATGAAAATGGCGGCCACAGGGTGCGCCAAATCCGCTGGAGGACTGGAGCAGAGGAGCCAGCCCGGGCTGCACTTACCTGCCCGGTCCCTGACTCTGGAGGAGGCGCGGTGTCCGGTCTGCCAGGAGATCCTGCTGGAGCCCGTCACCATGCCGTGCGGCCACTCCGTCTGCCTGCACTGCTTCAGGCGGACGGTGCAGTTGAGCACTCTGTGCTGCCCTTTATGCCGGCTGAGAGTGTCCAGCTGGGCCCGTAAACAGTCCCGGGAGAAGAGCCTGGTCAACACCGAGCTGTGGGAGAAGGTCCGCCAGAGTTACCCAGAGAGATGCAGGCGGAGAATAGAGCAGAGAGACGGAGCGACGGCGGGGGAAGATGTTTTTCGCTCACCTACACAAATATATAAGGCTGGAGAAGTGCGGCAGGagtatgaaaaacaaaaaattaagGTGGCTGTGGAAGAGGAAactgaggagagaaagaaaaaaatgcctcATCACAGAAAAGAAGAATGTGGACTGCTATACTGTCATGATTCTTCATTTGGAGTTCTGTCAGACTCTGAGAATAAAGAGCCTATAGGGATGAGGACCAGGCATGTATCTGCATTTGTGCGGAAAACAAGGCTTTCTCCGGCATCCAACAGAAGTTTTCAGAACTGTGTCGTTCAGAGAAGTAGAAGTTGTACTGACTCTGAGGAAGGCAGAGGAAAAAACAGAGCACAATCCCACATTTCTGTACCAGAGAAGGCTGGTGTAACTCACAGTTTCAACGCTGGAATCCTCCTGTCCTCTGAGAACAGTCGTTCCTTCTCGGCCCCTGTTCTCCCACTTGATAAGAGGCATCACTGGCGTGCCATATTGGCCTCTCCTCCTACCTCGCTAGTGCCTCACAGTAAACCAGAGAGATCCATTAGCCCTGAGAGCAATGACAGCATCTCTGAGGAGCTGAACCACTTCAAGCCCATCGTCTGCTCCCCGTGCACCCCACCAAAGAGGTTGCCAGACGGGCGGCTAATGGAGCCCACTATAGTCAAGTCCACTCCAAGGAACCTGACCCAAAGCCTCCAGAAAACCACCAGCTATGAGGCCAGCCCTACCATCCTTCAGAAGTGGAAGCAGATTGAGGTTGATCGCCAGTGCATCCGGGTGACATCCAAAGGTACCATCACCAGCCCAGTGGCAGATGATCTAACAGTCAAGCAAAGTTCAGGAGAAGAGACTGAGGGCAAATCCTGCAACTGTGTTCCAGTTGAAAAGGACAGGCAAGGTCAGCAACTTGCCTGCAATCAAAATACCGTTGTTCatggaaagaagaaagagaagttGAGTAATAAGAGACGATTGATTTTTGATCAGTGTAGCAGAGAAGGAGAGACACAATCAGTGACAGCAAATGCAGTGCCTGCATTGATAACACTAGATAGTTCTGACGTTCACAAGTCACACAATGCTTGTAAAGCACAGGGTGAAGTCTTTAAATCACCTGTAAGTGGAAAACATGCTGGAGTAAGTCATTGTAATCAGGGTACTGAGGACCTTCAGGACTTGAATGAGACTGAGCCCACAGTCAAGAGTTGTGTACCCAACAGACCTACCTCAAGAAGGGGCAAGAAGAGGAGCCAGAAAACCAAACATTTAGAACTGActgggaaaataaaaatatccaggACAGAAAGCTGTGATCCTTGTGAACCTCAGCAAGGAGACAGACATTTCTACACGGTTGCACAGATGCATCAGGAGCGAAAAGACAGAGAACTGGCGCTAAAGCTGCAAAGACAATATGACAAAGAATGCCAGATGATCGAAAGACATAAGACGAGTTCTGATAAGTACTCTCTGCGCTCCTGGGCCTCCACGGGCAGTAGAGCAGTGCGAAATCCACGCAGATCAGGAAGAATTTCTGGAAGACTCAAACACTTTCAGTTGTGAGTCTCAAATCAAGAACAAAAGCAAATTGAGCAAGACTTATGCTGTTTGTGGGGCAGATAATGTTGACACATCTTAGAATGGTTTTAGTCTGGGGACAACTATAGCAGTTATTTTACCtcacaaaaaattgcatgttaaaaaaaataattcccaCATAGTTGTGCTAAAAATGGCTCTGTTGTATGATACAGTTACAGCAGATATATTTTCCCTTGAACATGCACTGACATGCCTAAAGTCATGAGATAAAATTGGGATAAATtgattatgaagtgttacctcagaatACGGCTTAAGAATGCCCACACTTTATGCAAGTTACAgacaagttgtgaggtgttaccttgtgaGTGGGGATAAACTGTGGCCAGCACGCTTATCTGAGTAAGGCCTGGTGGTGCTTGCATGATGGATGGgatgttttttatttccaaaactgTGCAGACATTTAatattcctcgatccacagtatCGAGTGTGCTATAAATAGACATCGTAGACAGCACACAGTGGAAGCAGAAGCGGCAGCATCTAATCTAAATCGTCTGTGTAAACAGACAAGTGAGTCTGGccgaaatcacatccacattcaatgcagaagaTCCCTCAAGTATATCTTTCAGATCAGTGCAGTGCTTCTTAGATTCCATGGGccgtggcaaaagtcatgggacattactgattcctgtcccatgacatgtggcatgtcagtgtcaTTGAATTTTGCTTTTCTATGCTCAGTTTGCTGAAAGAGTTAAGACTTCCTGTCTAAAATGACCCCCAACCACATCAATCAAGGGACtgttattttgaattattaagctctttgaaaaaaaatatgtgaaatagCCTATCTTTATGCAATCTTTATGTAACAAGTTACTGCTAtaaatctaattttattttgttaaaatccAGAAAAGCACTAATATGGAAATGCTGTAAATGCATTGTAATTTTAATAGCAATTAGCTctatttctttttgtattaaaacataCTTCTTATGTGCTCAGTATGTATGATGTCAATGAGAGCAACTTGAATTTCTGGCCAACAGACATATGCAGTGCTTTCACTCTAATTGGGATGGCACTATAAaagctttatatacagtacattacccAACTCAGTAGCTCagttaaaacatgttctgttgctttgagattttttctttttttcttttctttttttaaatgtaattatttttttggaaattaaTCAACTTGTGGACTTGACCCCATGTTGTGCATTAGGTTTGCACATGTGTGAGATGCTTctctgttatttttcttttttaatttcccttgtgttttaaGTATTCTTCACTACAGATGACTATTAAGGAAAGAGTGCATATCATAAAAGGGTTTTGGTGTACTCAGCAAGCCTTTATCCTTGAATTTTACTGCTAAATGGAACACTTGCACTATAAATGAACAGGCGTATATACTTTGCATACAATAtgctcttaaaaaaaagttacttcacAGGGTTTTTTAAGCAATGTCCCACACAAACCACTTTTGGTATCATAAAGAACGCTCCAAAAAGATCtttgtaaatgtaaagaatCTTCAAGTGATTTaccaaaattgtttttttatggaaccaaaagtgttttttctgtgattaaatTAATCTTACAATGTTTTTAGTCTGGGGCAACTAGcggttattttgtttttatccgACAAATAATTGCATACATAATTATACTAAAATTTGTTCTGTATGATACAGATATAGCAAAAACATATGCTCTCAACATGCACTGACATTCAGAAAGTCAAGAGATAGCAGAATATAACTTCAGCATTAACTGTTGCTTCTATATGAAACCAAAGTTAGTTCTTCTATGAGATTGATCAAAGGACCCATTGAAGTACCTTTATTTTGAAGAGTGTCCATCACTGTAGACTGTTCTGACAGGAGACATGTACTAATAATGTCTAATAAATGTGCCAAAATTGGTGATCTTGCCAGTGATTTAGACCATCCAACCACGTTTATGCCTTTTCTGCCTCACCCACCATCATTTCAGAACAATTTATTTGTAAGCTTTGTCTACACAAACTGTGCATCTCAGATCTCCAGTAGGTACTGTGTAATAAGTTCAGAACAATACTGTTAAAGACACAGAATTCGCGGGATGTGAAGGATCAGCTGGGCATGGTCTGGCTTTGAATGTGTGAAGTATTTGATATGTTTGGCATTGTGTGTTAGATTACATTCAGAGAATGTGTCAGATTTGTGTATGCTTTGAAAATCATGTAAATAATGGGACCAAATGCACccattgttgtatttttttaaacaatgttttaataataggGCAGTTTAAGCCACAGGATTGTTCAGCTCAACACTGTAAACCTGCagtgttttatttctaaattacaAGCCAAAATGAAATGTAGCATATCAGTACAGAAtttatttttcctctcttttgtttgttttgcagaatttaattttaatgtgttaaaaaagatcataactgcattattttactagtagtaaaagtaaattCAGCCTCTGATCAAACTGATGCATTACTGTTGTTAAGATTTTTGAGAATCTGAAAAATGTGGCTGTTTTGACAAACTGTAGTTCAGTATTGTTCATTAGTTATACAGCTCAGCTGAAGTTTAATTTCTTTTCACAATGtattttcacacaatgattagtATCCACAATTGGTTTCAATTAAACTGACGCAAATGGATTCTTGAGGTAAACCAAGAGACTCTTTCTGACAATTTTATTcatctagtatgaataaataatagatacatattaaataaaagattGTTTACTTAC

Function

symbol description
rnf169 Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and nucleosome binding activity. Predicted to be involved in cellular response to DNA damage stimulus and negative regulation of double-strand break repair. Predicted to be located in nucleoplasm and site of double-strand break. Orthologous to human RNF169 (ring finger protein 169).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF169-like

GO: NA

KEGG:

id description
K20805 RNF169; E3 ubiquitin-protein ligase RNF169

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236780.3 True 4817 mRNA 0.41 6 25062687 25072518

Neighbor

gene id symbol gene type direction distance location
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding downstream 23885 25006992 ~ 25038802 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding downstream 58776 24987066 ~ 25003911 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding downstream 363227 24690075 ~ 24699460 (-)
brip1 NA coding downstream 375509 24567591 ~ 24687178 (-)
nlrx1 nlrx1 coding downstream 1115309 23928815 ~ 23947378 (-)
LOC111193727 NA coding upstream 146691 25219209 ~ 25225815 (-)
LOC103046310 NA coding upstream 570828 25643346 ~ 25660463 (-)
nudt8 nudt8 coding upstream 601354 25673872 ~ 25680956 (-)
maml2 maml2 coding upstream 756405 25828923 ~ 25905572 (-)
gab2 gab2,LOC107561751,LOC107593477 coding upstream 840081 25912599 ~ 25998864 (-)
G13481 NA non-coding downstream 623 25061710 ~ 25062064 (-)
G13477 NA non-coding downstream 17378 25045106 ~ 25045309 (-)
G13476 NA non-coding downstream 19171 25043240 ~ 25043516 (-)
G13444 NA non-coding downstream 69164 24991921 ~ 24993523 (-)
G13427 NA non-coding downstream 93856 24968292 ~ 24968831 (-)
G13483 NA non-coding upstream 3668 25076186 ~ 25083642 (-)
G13492 NA non-coding upstream 47329 25119847 ~ 25120476 (-)
G13515 NA non-coding upstream 158464 25230982 ~ 25231843 (-)
G13516 NA non-coding upstream 161173 25233691 ~ 25233970 (-)
G13524 NA non-coding upstream 222049 25294567 ~ 25298212 (-)
spcs2 spcs2,LOC107677086 other downstream 6586 25050960 ~ 25056101 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 1153916 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 1209389 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 1508717 23539257 ~ 23553970 (-)
G12767 NA other downstream 3067936 21993807 ~ 21994751 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 401216 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 451269 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 652395 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 929813 26002331 ~ 26016396 (-)
G13960 dscaml1 other upstream 1597601 26670119 ~ 26698793 (-)

Expression


Co-expression Network