pgm2l1 (pgm2l1,LOC107684026,LOC107677044)


Basic Information

Item Value
gene id pgm2l1
gene name pgm2l1,LOC107684026,LOC107677044
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24987066 ~ 25003911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236781.3
GCGGCTGTTTTCTGCAGCTAGCGTTAACGCTGCGAGGTTGCCGCTGCCGGGATGTGTGTGATAACCTGACCGGTTTAAAGCGCTAAACCGCTGCTCCGGTTTTAGATTCTCGGAGTAGATTGAATTAATCAAACTAATATCCAGAGTTAACGCGAGGGAACTGAGAAATCAGGCAGGGCGCGATTTAGCGTGTGTTcgtgtctgctgctgctgattataGTTATGTGGCCAAATGAGGACCTGAACGCTAACTCTGACTGTGTGCTGAGCACCGGAGACCCCGCTCTGGATAAACTGATCAACCAGTGGATCTCCTGGGATAAGaaTGGAGCGACCCGTGAGCAGATCAAAATCCTGGTGCAGGAAGGGCGTGTGGAGGAACTCAGAAGAATACTGGGCTCCAGGATGACTTTTGGAACTGCTGGTCTGAGAGCAGCTATGGGAGCTGGCTTTTCTCGTGTCAACGATCTCACTGTAATCCAGTCAACACAGGGTATGTACGTATATCTGGCCAAGTGTTTCCCTGATCTGAGTAGCAGAGGCTTGGTGGTTGGCTACGACACACGAGCACAGGAGTGCAGTGGCTGCACCAGTGAAAGACTTGCACGACTGACAGCAGCTGTGATGCTTTGTAAAGATATTCCAGTTTATCTGTTTTCTACATATGTGCCTACCCCATTTGTGCCGTATGCTGTAAAGAAGATTGGAGCTGCTGCAGGTGTGATGATCACTGCCTCTCACAACAGAAAGGAGGATAATGGATACAAGGTATACTGGCAGAACGGTGCTCAGATTTCATCTCCACATGACAAGGAGATCTTACGCTGCATAGAAGAGAATACTGAGCCATGGCCTGAGTCCTGGAATGAAGACCTGGTTGAGGACAGCCCATTAAGGAGTGATCCACTGGAAGACGTCTGTCGCTGGTATATGGAGGAGCTGAGGACTGTCTGCTTCCAAAGaGAGCTCAACACAAGGTGTCCCTTGAAATTTGTGCATTCATCTTTCCATGGAGTTGGCCATTCATATGTCCAAAGAGCATTTCAGGCGTTTGGGTTTCCACCTCCTATCCCTGTACCAGAGCAGATGAATCCAGATCCAAACTTTTCCACTGTCAGCTGCCCTAATCCAGAAGAAGGAGAATCAGTTCTGGAGCTCTCCCTTCGTCttgcagagagagaggaagccaAGATTGTGCTGGCCACAGACCCTGATGCAGATCGGCTGGCTGTTGCAGAACAATGTGATAAGTGTGGTTGGAAAGTATTCACGGGGAATGAGCTGGCTGCATTGCTTGGTTGGTGGATGCTGTACAACTGGAAAGAGGCTCATCCAGACCCAGAAGACACAGAAAGGGTGTACATGCTGGCCACCACAGTCTCCTCCAAAATACTTCAAGCTCTGGCGCAAAAGGAAGGCTTCCATTTTCAGGAAACATTGCCTGGCTTCAAATGGATTGGAAATAAAATCCATGAGTTAACAAAAACAGGAAAGGAGGTCATTTTTTCCTTTGAAGAGTCCATTGGGTTTCTGTGTGGGAGCATGGTGCTGGACAAGGATGGAgtcagtgctgctgctgttgtcgCGGAGATGGCAGCACATTTACATACCAAAAATATAACTCTTAAGCAGCAACTTCAATATATCTATGAAATTTATGGCTTCCACATTTCCAGAACCTCTTATGTTATCTGCAACGACCCTCCCACAGTCAAGAGAATATTTACTCGCTTACGAAATTTTGAAGACGAGGGTGTTTATCCAAGGAAGTGTGGGGGATACAGCATTGCACACGTCAGAGATGTGACTACAGGTTATGACAGTAGTCAACCTGACAAAAGATCTgttctCCCAGTGACCAAAAGCAGCCAAATGGTCACGTTCACATTTCACAACGGCATTGTTGCCACGCTTAGGACAAGTGGAACAGAGCCAAAAATCAAGTACTACACTGAGTTCTGTGCACCACCTGGAAAGAGaGATCTGTTCAGCCTTGAAGATGAGTTGAAGAAACTGGCCTCTGCTCTGCTGGAGGAGTTTCTAGAACCTGAGAAAAACAATCTGATTCGCAGATCAGTGTAGAAGTGTCTTACATACAGTGACTGCCATCCCTGTTGgcgtatttaatttaaatagagTTTCAAACTCTGAATGTTATTACACCACTGTGAAAAGATGTCCATTGCTGCAAAGTTCTTAAGGTGCAGATCAATGCAGAGTAAACAAGCATACTTAGTCCTGCCTTTTGAGATTTATGTATTATAagcattatatttaattatgtgGTTTTCTTGAAAACAAGAGTGTTCAGTTCTAAGCAGTTATATGGTTTTATCCCCTACATAACGTTTTGGTGTTGGCTTGTTATGGGGTGATTGTTCTGATCAGTTTCCACAGTGTGGAATGCAACCTTGTGTTTGATAATACAGAGAGTTTATTACCTTTAACAGAGCTGAAAGTCATTGATTGTCTGCCCACAATGCACTTCCAAATAAAATCTgacatttctttcattttttgatGTAGAAACAGTAATTAGCATAACTGAATTATTTTTGACATGGTAATTGCTCTTGTTGGGCAGGAGAACTCCTAAACAAGACACATTTACATAATTTGCTAAATAATGtgcacatatatttattttattaacttcTCCAGTTAATGAACAAGCTTTGTTAAAAATAGCAGTGTATTACAAGGCATTAATAAGCCATTACGCTACTGTAGAACAGATTGATTTACTGGTTTTCCAGATTGCAGTTTGACAGTAACCCATTTTGCACATGCTCAGTAAACCCAGAATCTGGAAATTGTACCAGACCTTACCCAGACCTCATCCTGTCAGCCCCCTAGTACACATTGTGGGTGTTTATGGGAGCCTAAGTGTGAATAGAGCAGGTCATTTTCTGAAAAATTCCACAGTGGGTCGTTCCCTACCTTCTACAGGCACTACACATGCTGTATTTCCTGTGGTGATGGTGTATCATCTCAGGCTGTATGCTGTATGTGTTTAAGAAGAGCTCCAGCTAATATCTGCTTCTCTGGGTATTTTCTGAGTTCTTGTGTAAAACCAGACTTGCTGCTTTGCTTGTGTGAGCTGCAGAAAGGGATATGACATGTTATTAACTCACTCATTTAGCAGACAGATGAATCTGCACTAGCTTGAGCTATTACTACTCAAGTAGCTTTGATCACTGAAAGGGAGGAAACTAGCATTCACTTATAAGTTGCTTAGTATAATTTATATGTCGTGTGCACATAATGTGTACATTTCAACAACAGTCAAATAGACAAAGCAATAGACAAAGGATACTTACAGTAAGGGGTGTCACATGAGTTCTAGTTGTTAATATTGCAACCCATGTGACTCCCCTTATTTAATAGTTTGTAACAAAGCTGAGGTGTCTACTCGGAAgcaattaaataatgtaaatgctTGCAGTGTAGATAAGAACACCAGTAACAGTTTTCTAGACCAGCCAGTGAAGGTTAAGTTGTTTTAACCACGACTCGAAACCTATTTTCACCAAGTATAATGCTGTTTATAATAAAGGTAATATAGTTTTAACTTGCTTTACTGCTTAATGGTTTGAACTATGATTTCTTAAGTATGCCAAATTGCATACTACCACTGCTCTGTATAGTTTAGCACCCAgttcataataaaaatattaatcagaatataaataaaattagcaaAATGTGCAGGATAGGAATAAACCGGGACCAGAATAAGGAAACGCTGTAATAAGACTTCATGTTAGGCAAACGTGGTATATTAAACACTGCACAGATTAAgaaaatctttatttagttaTACATTAGTATGTTTTCTAACCATTTAGAATAATGCTAGTGCTGCTTCTGAGACCAGTGCTGAATTGTAATGACGTCTTACAGGCTTTGAAGAATCAGTTTTCTCCCAGCTGGTTGTTTAACAGGTGTTACCCATTATGTTCCTGATGAAAATAGAAAGCCATCCCCTGTGCTGTGCAGCAGATATGTCAGTGTTCTGTTCTGTGTATGGTGTTCTGTggattttgtttgtgtgtgaaagtcttcataacaaaaaaaaaaggacttgCTGCTTTTTTTCGTACAGAATTTCCTTTTGTAGAGCTTCAGGTGTTTTCaatgctttattatttatgagATTTATTAGCAAGTTATTCACATTATACCATGTAGAACTTGGCCTGGATGATGAAGATTGTGACAGAAAGCACTTATTGCTGGTAATGTACAGTGGTTCAAAGAACagataatatattttagataaacAGCAGTTTTGAaatccaaaagaaaaaaatattctgtgtgAAAGAATAAAATTTGTGTTACTTATGCTATATTTCATgcattgcattttattttaccaataaAACGTTGCTTTAGAAAACTGA

Function

symbol description
pgm2l1 Predicted to enable intramolecular transferase activity, phosphotransferases and metal ion binding activity. Predicted to act upstream of or within glucose metabolic process. Orthologous to human PGM2L1 (phosphoglucomutase 2 like 1).

NR:

description
glucose 1,6-bisphosphate synthase-like isoform X1

GO:

id name namespace
GO:0016052 carbohydrate catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0004614 phosphoglucomutase activity molecular_function

KEGG:

id description
K11809 PGM2L1; glucose-1,6-bisphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236781.3 True 4406 mRNA 0.41 14 24987066 25003911

Neighbor

gene id symbol gene type direction distance location
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding downstream 287606 24690075 ~ 24699460 (-)
brip1 NA coding downstream 299888 24567591 ~ 24687178 (-)
nlrx1 nlrx1 coding downstream 1039688 23928815 ~ 23947378 (-)
LOC103036322 LOC108439975 coding downstream 1059690 23909411 ~ 23927376 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 1091991 23859753 ~ 23895075 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding upstream 3081 25006992 ~ 25038802 (-)
rnf169 rnf169 coding upstream 58776 25062687 ~ 25072518 (-)
LOC111193727 NA coding upstream 215298 25219209 ~ 25225815 (-)
LOC103046310 NA coding upstream 639435 25643346 ~ 25660463 (-)
nudt8 nudt8 coding upstream 669961 25673872 ~ 25680956 (-)
G13427 NA non-coding downstream 18235 24968292 ~ 24968831 (-)
G13419 NA non-coding downstream 177995 24775808 ~ 24809071 (-)
G13393 ccdc9,LOC107743647 non-coding downstream 274081 24707486 ~ 24712985 (-)
G13390 NA non-coding downstream 322028 24664593 ~ 24665038 (-)
LOC111193726 NA non-coding downstream 500338 24477718 ~ 24486728 (-)
G13476 NA non-coding upstream 39329 25043240 ~ 25043516 (-)
G13477 NA non-coding upstream 41195 25045106 ~ 25045309 (-)
G13481 NA non-coding upstream 57799 25061710 ~ 25062064 (-)
G13483 NA non-coding upstream 72275 25076186 ~ 25083642 (-)
G13492 NA non-coding upstream 115936 25119847 ~ 25120476 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 1078295 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 1133768 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 1433096 23539257 ~ 23553970 (-)
G12767 NA other downstream 2992315 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 4011912 20975082 ~ 20975154 (-)
spcs2 spcs2,LOC107677086 other upstream 47049 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 469823 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 519876 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 721002 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 998420 26002331 ~ 26016396 (-)

Expression


Co-expression Network