LOC103029671 (cbx8,LOC108432169,LOC102784560)


Basic Information

Item Value
gene id LOC103029671
gene name cbx8,LOC108432169,LOC102784560
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12468650 ~ 12471254 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240517.3
GCGGGTATTATGGGCTGTCGCGGATTGTACAGACAGAGGTTGTGGCAGTGGGACAGAAGTAAACATGGAGCTCTCTGCCGTTGGTGAGAGGGTGTTCGCGGCCGAATCCATCATCAAACGACGCATAAGAAGAGGTCGGATGGAGTATCTGGTGAAGTGGAAAGGCTGGTCTCAAAGATACAGCACCTGGGAACCGGAGGAAAATATTCTTGATGAACGTCTCTTCGCTGCTTTTGAGGAGAGagagcgtgagagagaacTCTACGGGCCGAAAAAGAGAGGACCGAAACCGGGGACTTATCTCTCAAAGgCAAAAGCTAAAGCCAGTAccaaaaattatgaatttagaAGAGAGATGTCGCGAGAGATCCGGGTTTCGTTTCCCATGACGGAGCCAGTGGTCACTCCTCGAGCTCGCGAAGGTCTCCGGACAGTAGTTCCCACCATTTTCCCCCCTAGCACCGTCAACAGGGGCGAAAGTGTCCGACTTCACCCCCCAGAGCCTGAGAGGAAAGCTCGACCTGGGCAGGACCACGTGGACTTTCTTAGCGCCCCCAAAAAGAGGGGCCCAAAACCAAAGTTGCGTTTTCCTGTTCACGTTGCATCCTCTAAATCATTTAACAGTAGGGCAGATGAGCACTTCTCGCTCAACAGCCGCTCTACGGTGGGCGAGCGGTCTCATTACGGCCTAATGCAATTAACGCAGCAGCACTTATCTGGTCTTTACGGATCCGAGGAGCCAATCGATGATGACCGGCTGTCCCCGGAGCCGCTGGGTGTAAAGGAGGATGGTGGGGAGTCCTGGAGCCCGTGTCTGAGAAACATGGAAAAGGTTATAGTGACTGACATAACCAGCAACTCTGTGACTGTGACGATTAAAGAAAGCTCCACAGATAAAGGCTTCTTCAGGGAAAAAAGATGATGGATGTTAAAGTCAGTGACCTGATGTAGAACAGCTCTGAACAGGTGTTATCCTTTCTTTAGTCTCTAACTGTACAGTGTGTCTCAAAatcatgtgtatatatgtaacaaaaaaatagtcTGGATATACATTTtcatctgtattttctatgaaaatgaaatttatttttgtacctcCCCAAGTTTGTGTAATGTGCAgcaattaattgtttaattgtttatctCTCTAAACgcctgtgagctataatgactaCAGGCACAAACTGCTGATAACACTTTTTCAGTTTCCAGCACCTTCTATTCAGAGTGAACGTCTAGTTCCTCTACCGACATCTAATTTACTATTGTCCTTTGTTGTACTGTGTGTACATTTGAAGGCCTAACATTGTCTGTATTAAAGCACAgagtaaaaataagaatataaatgcaaa

Function

symbol description
cbx8 Enables methylated histone binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in chromatin and nucleoplasm. Part of PRC1 complex. Biomarker of esophagus squamous cell carcinoma and glioblastoma.

NR:

description
PREDICTED: chromobox protein homolog 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240517.3 True 1352 mRNA 0.46 5 12468650 12471254

Neighbor

gene id symbol gene type direction distance location
LOC103031044 NA coding upstream 5397 12451903 ~ 12463253 (+)
gaa LOC106601771 coding upstream 166936 12283270 ~ 12301714 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding upstream 398238 11943718 ~ 12070412 (+)
LOC103023317 LOC108432209,LOC108260824 coding upstream 551375 11882731 ~ 11917275 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding upstream 718441 11744412 ~ 11750209 (+)
LOC111188181 LOC108432168 coding downstream 2963 12474217 ~ 12484578 (+)
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 424642 12895896 ~ 13001095 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding downstream 1630612 14101866 ~ 14112197 (+)
LOC111194173 NA coding downstream 1730097 14201351 ~ 14213960 (+)
LOC103039204 NA coding downstream 1753929 14225183 ~ 14230983 (+)
G9918 NA non-coding upstream 119873 12344620 ~ 12348777 (+)
G9870 tnpo2,LOC108432206,LOC105910653,LOC106601762 non-coding upstream 188310 12277539 ~ 12280340 (+)
G9868 tnpo2,LOC104950577,LOC103360699,LOC108432206 non-coding upstream 191838 12274840 ~ 12276812 (+)
G9861 tnpo2,LOC108432206 non-coding upstream 195729 12265778 ~ 12272921 (+)
G9856 NA non-coding upstream 243960 12223700 ~ 12224690 (+)
G9999 NA non-coding downstream 114834 12586088 ~ 12589528 (+)
LOC111193353 NA non-coding downstream 125143 12596397 ~ 12597719 (+)
G10001 slc5a11,LOC107670676,LOC107728787 non-coding downstream 137711 12608965 ~ 12610876 (+)
G10010 NA non-coding downstream 186351 12657605 ~ 12658147 (+)
G9993 NA non-coding downstream 198819 12670073 ~ 12670422 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other upstream 87302 12302527 ~ 12381348 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 1030318 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 2439060 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2856838 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 3537645 8919829 ~ 8931005 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 56435 12527689 ~ 12600530 (+)
G10003 NA other downstream 142437 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 302959 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 663347 13134601 ~ 13135118 (+)
G10362 LOC108427334 other downstream 1543098 14014352 ~ 14020095 (+)

Expression


Co-expression Network