otop1 (otop1)


Basic Information

Item Value
gene id otop1
gene name otop1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34044511 ~ 34055572 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240685.3
TAGTatctcgctctctgtctcctCGAGTCTTTCAGAGCGTGGCGCAGTCTCACATTCGGGAGCGCTCTTCGCGGGGGCGCGCACCGGTCCTCATCCAGCACGACGGAGCGCCCGTGAATCCGTGAACTGTGTGAGTGAACCGTGCCGGTCAGAGCGCGCCTTTACGCGCGGAGCTGCCCGCTGTTCCTGGAGCTCCTGGAGAAGATGGTGGAACACAGCAGCCTGGACACGATGTTCCTCAACAAGTACTGCCCcagctcttcctcctcctcctcctcctcctcatcctcatcctccgACCGGGACGGGAAGCTGCTGCACGCGCTCCGCGGGAGTCTGGGTAAGAAGTACCCGCAGAAGAGCGGCGAGGTGCTGAGCGCGCAGTACGGCCTGAACCTGCTGCTGGTCGGGGTCTCGCTGATGCTCGCGCTCGCTTATCAGGGTCCGAGCGCGAGCGAGGAGACCGTGCTGGCCTTCCTGAGCGCGCtgatgctgctgcagctctTCTGGATGGGCTGCTACATGGGCCGCAGAGAGCGCAGGCGCAGCGCGCCGCCGGAGAGAGACGCGCACGCGGCCACCAGCTGGATCAAAGGTGGTCTCACCATGCTGGCACTGCTCTCGCTGATTATGGACGCTTTCCGCATCGGCAGCTTCGTTGGGTACCAGGCCTGTGTGTCGGTGATGTTGGGGGTGTATCCGGTGGTTCACGCACTTCATACCATCTCACAGGTCCACTTCATCTGGTTCCACATCAAAGATGTCATCAAGAGATACGAGACATTTGAAAGATTCGGCGTGATCCACGCTGTGTTCACCAACCTCCTGCTCTGGAGTAACGGAGTGATGACTGAAGCAGAACACGCTCTCAATGACCACAAGAAACGGCTGGCGGCTCTCGGATATTTAAACTTCACCGTGGGTTCTGAGGAACCGAACTGTAACTGCACCACGAGCGCCTGCTCCATGTTCAGCAGCAGCCTGTACTATCTCTGCCCCTTCAACATCGAGTACCACATCTTCGTCTCTGCCCTCCTCTTCGTCATGTGGAAGAACATCGGCCGCAAACTGGACCAGCAGACCAAGCGGAAGCAAGGGTCGACCGGCGGCTCCTGCCTGCTGCTGGGACCCATGCTGGGTCTGCTCGCCCTGGCCAGCTCCATCACCGTGCTGACCATCTACATCATCCACGTGGAGGAGTCGGCCGACGCCCGCGAGGCAGCCATCTCCATGTACTACTGCTTCGGCATTGTGATCCTGGCCTGCATGAGCGCCGCTGGAGCCGTGGGGCTTCTGATCTACCGCGTGGAGGACTGGCCCATGGACACAACCCCCAACCCGGCCCGGACCCTCGACTCCAAGCTACTGCTCGGCTCATCTGTGGGCTCCTGGCTCCTGTCCTGGTGCAGTGTGGTAGCGGTAGGCGGGGCTCAGAGTTACCCCTCCTACCGCTGGAGCAGTCTGGCTTATGCTCTGCTGCTGGTTTTGGAGAAGTGTGTGCAGAACCTCTTCATCATCGAGTCTCTGTACCGCAGACGCCTTGAACCTGGAGAATGTCCCCCAAACAGCCCCTCTCACCGCGAGATCTACTCCGTCACAGCGACCATGGCTCCTCCATACGACGGCATCATTAACCATGCGTTTGAGAGTTCGGACAGACACCGCGAGGTGCTACAGACCAGCAAACCAGACAACAACACTTTTGACAAGACCAAAGACGTTTCCCTTCCCATTGGACTCGGAGTGAAGAGCTCACCCAGCCGGAAGAGACAGGTCCTGAAAAATATCGCCATCTTCCTGTTCATGTGCAACATATCATTGTGGATCTTGCCGGCGTTCGGCTGCCGGCCGCAGTTCGATAACGGCCTGGAGGAGGCGTCATTTGGATTCCCCATCTGGAGCACGGTGCTGAACTTCGCCCTGCCCATGAGCCTCTTCTACCGCATGCATTCTGTAGCTGCTCTCTTTGAGGTTTTCCGCAAGATCTGAGCCAAGCTGATCCAGAACCTGTTGTGGAGGACTGGAAGGCCTCTTTTATGAGTTCTCAAACCTGAACAGTTCTCCTCTTTGCTCTAATTGGACAGGAGAAAGAAACTGATTGCTTTTTCTTCACTGTGATTGGACAGACTGTCTGTTACCAGGTGCTGTGCTGTGGTGTGGTTCTTACAGGAACTTCATGAACTCGTCCATGCACCTTCAGCACCTTTAGAGCTCCATCCCTGCTGTCTAGCCTTGAGTTGGGTTGAGTCGATTTGATTTATGTTGGTGATAATGATAATTATGTACTCTGAATAAAGTTGCTTTAGTTTAGGGTGTTTAAAGGGCTTAAAATACTGACAGATATAAAATACTGACTCTGGGATCTGGGTCGCTCACTTATAGATTAAAAAGTTAAAGATTGAGGGAGTGAGACCTGTGGAGATCACCCAAGAACTTTCCCCAAAAACAAACCACTCTAGAGTCTGACTGGGGCTGGACCAGGTCCTCCTCCTCTCATGGGTTCTGGGGTGGTTTGTCTCTGTCCTCAAACCATGAGTCCAATTTAACAAGAATTAAAAGTGTAGGTGTAAAAGTACGCTGAGTCACACAGGTTAGTGACAAAATTCCAAATCTGGCAACCTTTCTGGAGAAATAATACAAACCATACAGCCTTAAACCACTGCTGTTTATTATTGCAGGGATTATTGCTCCTCATTTTCCTCCCTTTAGTTGGTGCTTATGAGTGCGATACCTTGATTTGTCTAGCAATATATGAAAAAGTCAGTTCtgcaataatcaataatcaaacaATTATCTCTAATCAAATGATGAATAACACATTAGCTCAGTGGGAGGGAAGAGACTCTGATTGATGCTGTTTTTGAGTTACTGTATCTGAACTGATATTCTTGAACTGTGAGACACTTTGGGACTCTCCTAAatgatgctgtttttattttctttatttttttaaccctgTGGTTTGAGTGGGGCGTGGATTTGGACCTCGTCACTTCTGATCACTTTAGAGCAACATCTGAACACATTTTCTCCAGTGAGTTTTAACTCTCGCGTTTCTGTTTCTTGGTCAGTTTGTCTGAAACTCTGCTTTATTTGCACTCTTACAGAAATGCAAGCAGCCCTGAGGCGCCGCCTGTCTGGTTATggttctcatttttcttttatttatttacgtcCTTTATTAAATCTTACGTTAATCCAGAACCAGCAGCGTCCACTTGAAATCAGACATAACGAACGCTGCTCAGTGTGCCGGACTCACAGCTTCCTGTTCCGGGCAACAGATGGTGCTGTGGTTATGGGCTGCTCTTAGAGCTTCTCCTGTAATGGAAAGGGAACCCTCGTTCCTCCTGGTCCTGGTCCTGGccctggttctggttctggtcctGGTCCTGGTCCTGGTCCTGGTTCTGGTCCTGgtcctggttctggttctggtcctGTGTGTGAACTGTATGTAAGCTGATGGATGATGTTCTCCTGTGTGTCTCAGTGCAGAAATGCTGAAGACTTGAATAACTTTATTGATGAGAGTTTAGAGCCATTCGCACAGTACTGCACCCAACATCCTGATCTGGATCTGGATCACA

Function

symbol description
otop1 Enables cholesterol binding activity; identical protein binding activity; and proton channel activity. Involved in proton transmembrane transport. Acts upstream of or within otolith formation and otolith mineralization. Is integral component of membrane. Is expressed in lateral line system; otic vesicle; vestibuloauditory system; and yolk syncytial layer. Orthologous to human OTOP1 (otopetrin 1).

NR:

description
PREDICTED: otopetrin-1

GO:

id name namespace
GO:0032475 otolith formation biological_process
GO:0045299 otolith mineralization biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240685.3 True 3590 mRNA 0.52 6 34044511 34055572

Neighbor

gene id symbol gene type direction distance location
LOC103031787 drd5,LOC107701828 coding downstream 3397 34039409 ~ 34041114 (-)
LOC103022214 NA coding downstream 135434 33898858 ~ 33909077 (-)
ankrd50 ankrd50 coding downstream 696338 33301233 ~ 33348173 (-)
nudt6 nudt6,LOC107690594 coding downstream 942905 33092865 ~ 33101606 (-)
kiaa0141 NA coding downstream 960335 33075133 ~ 33084176 (-)
tmem128 tmem128 coding upstream 2226 34057798 ~ 34065048 (-)
lyar NA coding upstream 16331 34071903 ~ 34078289 (-)
stx18 stx18 coding upstream 35062 34090634 ~ 34103374 (-)
cytl1 NA coding upstream 79014 34134586 ~ 34136572 (-)
LOC103038859 NA coding upstream 130056 34185628 ~ 34190394 (-)
G15486 NA non-coding downstream 2152 34041722 ~ 34042359 (-)
G15454 NA non-coding downstream 120503 33923606 ~ 33924008 (-)
G15452 NA non-coding downstream 153408 33833697 ~ 33891103 (-)
G15449 NA non-coding downstream 153681 33812017 ~ 33890830 (-)
G15451 NA non-coding downstream 156423 33828403 ~ 33888088 (-)
LOC111194046 NA non-coding upstream 79014 34134586 ~ 34136689 (-)
G15509 NA non-coding upstream 101755 34157327 ~ 34158162 (-)
G15510 NA non-coding upstream 111970 34167542 ~ 34167902 (-)
G15512 NA non-coding upstream 118628 34174200 ~ 34175378 (-)
G15513 NA non-coding upstream 121629 34177201 ~ 34178567 (-)
hopx hopx,LOC107552340 other downstream 1223707 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 1884548 32122222 ~ 32159963 (-)
G14839 NA other downstream 2989008 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 3120424 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 3121262 30914910 ~ 30923249 (-)
G15497 NA other upstream 79020 34134592 ~ 34136732 (-)
evc2 NA other upstream 96251 34151823 ~ 34172017 (-)
G15498 NA other upstream 185754 34241326 ~ 34242318 (-)

Expression


Co-expression Network