stx18 (stx18)


Basic Information

Item Value
gene id stx18
gene name stx18
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34090634 ~ 34103374 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240688.3
AGAAGAAAAAGTGTATGAGCGCGTGTCCCGATACTTCTGTCGCTGTAGTGTGTGCTGCAGGGTTGGGCTGTGTTCTAATCCGCGCTGCTGTAGGGGAGGCTGCAGTGAGCGCAGGGCGGAAATAGGATGCAGTTTGGGACGCAGCCGGGCTCAGTATTGTCGCGGCAGTGTGACGCATAGCTGGTGACGTGTAGTGTTGTGAGCTCGGCCAGCATGGCGGTGGATATGACTGTTTGTTCCGCGCGAGCGTTAAAAACCGTCAAAACCCGCAACAAGGCGCTGGGGGTGGGGCCTGACAGCAGGGGGGAGGAGCTTCTGAAGAGATCCAGAACCAGACCCGGGTTCTCCTGCAGAGCGAAGGAGGTGATCTCCAACATCACTAAACTGAAGGACTTTTTGCTGCAGCACAGGAAGGACTACGTCAATGCCAGCAGtttaaTTTCTGCAGATGTAAATCGTATGACGGACAGCGAGAGAGACCAGATCGATCAGGACGCGCAGATCTTCATGAGAACGTGTTCAGATGCCATAAAACAGCTGAGAActgaagctgagAAGCCTGGGATTTCTGCTCAGGTGAAGGAGCACCGGGGGGCGGTGTTGGACCTGATAGATTCTTACCTTAAAGgtgtgtgtaagCTGTACTCTGAGCAGAGAGCTATCCGTGTGAAGAGGGTGGTGGATAAGAAGAGACTatctCGATTAGAACCAGAGCAGAAGAGTAAAGTGGAAAAACCTCAGAGTGAAGACGAAGAGAAAACCCCGCCCCTGGAGGAGAACACCGAGAAGGCAGCGTCTGATGGAGGTGTGGAATTGTGGGAGGACAGCAGAGTGGAGGATGAGCTCTCACCAGAGGAGATACAgatgtttgaGCAGGAGAATCAGAGGCTGGTGAGTGAGATGAACAGTCTGGTGGATGAAGTCAGgcAGATTGAGGGGAAGGTGGTGGAGATTTCTCGGCTGCAGGAGATTTTTGCTGAGAAGGTTCTGCAGCaggaGACGGAGATTGATAATATTCATCAGCTGGTTGTCGGGGCAACTGAAAACGttaaagaaggaaatgaggacATTCGAGAGgCGATTAAGAATAACGCAGGGTTTCGGGTGTGGATCCTGTTCTTCTTGGTGATGTGCTCGTTCTCCCTGCTGTTCCTCGACTGGTACGACAGCTGAATCCCAGTTCTCCCAGTGATCCCGGAACTGAGGTCATCAGCCAGACCACTGGATTCCACAGAGACTATTTATCATTTctgtataataaaacaattctgcCCTGTATACGATCTGACCGATCAATCGGTTCATATTGATGATCAGCAGTTTTATGGttatcaataaaaatatatcactaaCATCAGCCCACACCTAACCACAGCTTTAACACGATAATAACaatgttataatttatattacgAGAAATGaagaatatgtaaaatattaaaaataagagaaaataaacaaagtttttgagtattaatataattacattCACTACAGATACagggtttaatattaaaataaatattacacagtgttttatatatatatacaaaacacagATGTTGAGATTTAATGTCTATAATTTTTATATCAGGTGGTCATAATTTATTGGGTGATATTGGGTGTAGGAATctgatggattatcacaggaggaACATTAGAAAGTTCTACAGCATGCTGAGACGTCTGCAGTGTTGCACAAACACTACTACTGTATgtgtaaatcaataaatattaccCTGAATATca

Function

symbol description
stx18 Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Orthologous to human STX18 (syntaxin 18).

NR:

description
PREDICTED: syntaxin-18

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08492 STX18; syntaxin 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240688.3 True 1749 mRNA 0.45 12 34090634 34103374

Neighbor

gene id symbol gene type direction distance location
lyar NA coding downstream 12345 34071903 ~ 34078289 (-)
tmem128 tmem128 coding downstream 25586 34057798 ~ 34065048 (-)
otop1 otop1 coding downstream 35062 34044511 ~ 34055572 (-)
LOC103031787 drd5,LOC107701828 coding downstream 49520 34039409 ~ 34041114 (-)
LOC103022214 NA coding downstream 181557 33898858 ~ 33909077 (-)
cytl1 NA coding upstream 31212 34134586 ~ 34136572 (-)
LOC103038859 NA coding upstream 82254 34185628 ~ 34190394 (-)
crmp1 NA coding upstream 87773 34191147 ~ 34198885 (-)
LOC103041332 NA coding upstream 110390 34213764 ~ 34216327 (-)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 116569 34219943 ~ 34228034 (-)
G15486 NA non-coding downstream 48275 34041722 ~ 34042359 (-)
G15454 NA non-coding downstream 166626 33923606 ~ 33924008 (-)
G15452 NA non-coding downstream 199531 33833697 ~ 33891103 (-)
G15449 NA non-coding downstream 199804 33812017 ~ 33890830 (-)
LOC111194046 NA non-coding upstream 31212 34134586 ~ 34136689 (-)
G15509 NA non-coding upstream 53953 34157327 ~ 34158162 (-)
G15510 NA non-coding upstream 64168 34167542 ~ 34167902 (-)
G15512 NA non-coding upstream 70826 34174200 ~ 34175378 (-)
G15513 NA non-coding upstream 73827 34177201 ~ 34178567 (-)
hopx hopx,LOC107552340 other downstream 1269830 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 1930671 32122222 ~ 32159963 (-)
G14839 NA other downstream 3035131 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 3166547 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 3167385 30914910 ~ 30923249 (-)
G15497 NA other upstream 31218 34134592 ~ 34136732 (-)
evc2 NA other upstream 48449 34151823 ~ 34172017 (-)
G15498 NA other upstream 137952 34241326 ~ 34242318 (-)

Expression


Co-expression Network