clcn7 (clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008)


Basic Information

Item Value
gene id clcn7
gene name clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28905061 ~ 28933768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245554.2
TTGTCACGAGTTGGCTTATGACCGCTGGTGGTGGGGATGGGTAGGTAGTGAAGGCGCAGCTGCGGCCGCGGGTCtgatgttttatcttttttagagttttaaagCGCTTCAGCCGCGCCGCCCCGACATGGCCAACATCACCAAGAAGGTGTCGTGGTCCGGCCGGGGAGAGGAGCGGACCCCGCTGCTCAACGGCTCGGAGGAGGTCCGCTACAGCAGACAGTCGTCCGGAGGCAGTGTGTTCCACATAGGCAGGCTGAGCACTGTAGACCTTGACGAGGACATCACACCAGAAGAGgATCCTGTGAGGAGCAAACCAAAGGAGATTCCACACAATGAAAAGCTGCTTTCGCTCAAGTACGAGAGTCTGGACTATGACAACAGTGAGAATCAGTTATTTCTGGAGGAGGAAAGGCGCATGAGTCACATGAGCTTCAGATGTCTGGAGATCAGTCGCTGGGTCATCTGTGGTCTCATCGGTTTTCTGACCGGACTCATCGCTTGCTTCATTGACATTGCGGTGGAGTATCTGGCTGGAGTGAAGTATGATTTAGTCAAAGAGAACATAGAGAAGTTCACAGAAGTTGGAGGTCTCTCCATCTCCTTGATCCTCTGGGCGGTGCTGAACTCTGCTTTCGTCATGGTCGGTGCATTGGCGGTTGCGTTCTTTGAGCCTGTTGCAGCAGGTAGTGGAATTCCTCAGATTAAATGCTATCTGAACGGAGTGAAGGTTCCTCGAGTCGTCCGGCTCAAGaCTCTGCTGGTGAAGGTGTTTGGTGTGATCTGCTCTGTAGCGGGAGGCCTGGCTGTGGGAAAGGAAGGGCCTATGATCCACTCTGGAGCTGTGGTGGCAGCTGGTGTGTCGCAGGGCAGGAGCACCTCACTAAAGAGGGACTTCaagATTTTTGAGTATTTCCGCCGGGACACAGAGAAGAGAGACTTTGTgtctgctggagctgctgctggagtCTCTGCTGCGTTTGGAGCTCCTGTTGGTGGAGTTCTGTTCAGTTTAGAAGAAGGAGCATCTTTCTGGAACCAGATGCTGACCTGGAGGATTTTCTTCGCCTCAATGGTCTCCACGTTCACCTTGAACTTTTTCCTGAGTATTTATCACAAAAAACCTGGAGAGCTGTCCAGTCCTGGTCTCATCAACTTCGGAAGATTCGACATGGATAATGTGCAGTACAGTCTCTATGAGATTCCTCTCTTCATAATAATGGGAGCGATAGGTGGAGTTTTGGGAGCGCTGTTCAACGTTCTCAACTACTGGCTGACGATTTTCAGGATCAGGTACATGCACCGGCCGTGTCTGCAAGTGATGGAGGCCATGCTGGTCGCCGCGGTGACAGCCACCGTGTCCTTCGCTATGATCTATTTCTCTAATGACTGCCAGCCTCTGGAAACGGTGACATCTGAGGATTATCCTCTACAGCTCTTCTGTGCTGATGGAGAATACAACGCCATGGCAACAGCGTTCTTCAACACACCCGAGAGGAGCGTGAGAAGTCTGTTCCATAATCccccagGCACCTATAACCCGCTGACCCTCGGCCTCTTCACCCTGACCTACTTCTTCCTGGCGTGCTGGACGTACGGCCTGACCGTTTCAGCAGGAGTCTTCATTCCCTCACTGCTGATCGGGGCAGCCTGGGGGCGGCTCTTCGGCTTACTGTTGTCCCTCATGACCACCGGAAAACTGgtaTGGGCGGATCCTGGAAAGTACGCGCTGATGGGAGCTGCAGCTCAGCTCGGTGGAATTGTGAGAATGACGCTGAGTCTGACAGTCATTCTGGTGGAAGCGACAGGAAACGTTACCTACGGTCTGCCCATCATGCTGGTGCTGTTGACTGCCAAGATTGTGGGAGACTATTTTATTGAAGGCCTTTACGATGTACACATTAAGCTGCAGAGTGTTCCTTTCCTGCACTGGGAGGCTCCTGCTACCTCTCACTGGCTGACAGCAAGAGAGGTCATGAGCTCTCCAGTTACCTGCTTTAACAGAGTGGAGAAGGTGGGCACCATCGTGGATGTTCTCAGCAACACGTCTACCAATCACAACGGTTTCCCTGTGATCATCCAGGCTGCTGCCAGTGAAGAGCCCGGGAAGCTCTGCGGCCTCATCCTTCGTTCTCAGCTCATCGTTCTTCTGAAGCACAAGgtgtttgtgGAGAGGGCTCGTTCAAGGCTGAGTCAGCGTAAGCTGCAGCTGAAGGACTTCAGAGATGCCTACCCACGATTCCCTCCGATCCAGTCCATCCACGTGTCCCAGGACGAGAGGGAGTGCATGATGGACCTGACGGAGTTCATGAACCCGACCCCCTACACTGTGCCTCAGGAAACGTCGCTCCCTCGTGTGTTTAAGCTGTTCCGGCCGCTGGGGCTCAGGCACTTGGTGGTGGTGGATGATGAAAACAGGGTCGTTGGGTTGGTGACCAGGAAGGATCTTGCTCGCTATCACCTGGGTAAGCATGGTCTGGAGGAGCTGCACCTGGCTCACACATGATGACCACCGGCCCTCCATACCCTCGCTCGCCTTCTGCCCACCCTCGCTGTTGGAGCCCCCTGACTGCAGCAGGCAGGATCTGGAGACGCTCAACAGATTAAATACGTTCCAGACATGGCGGACACACACCTGCAGCCCACAGCCGATACCAGTAAAGGCCTGGATACACCTGGAAGACATTTCCTTCAGAGACAGAGAATTCATACTGATTCTGAGAAAAAAACTCTCCGGGTCTCAGAGCTGAAAGACAGTGTTTTAACGAAGGCTGGGATTTAACAGACTGTTTAATGAAGCTGGTGTGTGTTTCAGGACACTTTCCACACTCTTTAGTTTCTGCACTCTTCATATTGTATCCAGGTcttttgttaataataatttaagggCTCAGTTGAGTTAGAGTGTAGACGTTTTGCTGCCTGTTGGTTTACAAAGCGAGCACATTACAAAGCATTTTTACGTTTTGCACTGCTGCaccactgtgtttatttattgcttttgaagcctttgttttttttttcatccatcaTATTCTCATCACCCCTAAATCTATATGTTCTTTCACATTTCTTGCATTTTTGGATTTTGGCattttgtttaatatgtttaatgttaaatataatcttaaaaataatggTACTTCAAATGGTTTAAGAATCACTGGCCTTATTCACCAAGCAGTCTTAAGAAGATCGTCTTAAAATATTGAGAGTCCGACATTCgctatttttttgttctgcatTTTAAAACACATCCTAAATCTAATGTAGACTTTCTGTTTAAGGAAATTCTTGGGAATTTTAAGAAAATTCTTGGGAGTTTTAAGTCAATTCTTGGGAATTTTAGGTAAATTCTTAGGAATGTATTGGTGAACGAGGCTTATAGTTTAATAGAGATCTACGATTGTGAAGAGCCTTTTAAATGTTAGACAAAGTTTAGGGTTCtttacagtctttttttttttttttttgtaactgatATGGTCCTTAACGGAACAAAAATTGCTCAAAATTTgcttaaagaaccatttaaagcaccattattatttttaaaagatcCTGTTGACATAAAGGACAAAGTTAAAGCATCTTTcgattaaattgatttttttttaataattcatttcaaattttaccccattttctatttaatgttAGACAAATTGCTCAAATCCCTCCTCGATAGAAGCCAATGCAATCAGAGGAAAGCgccggatccccagctctgatacatcagctaacaggtGTCTGTGCTGACTAACATCACACTATTGGACTGATGTGTGAAGAAAGCATGGCCACCATTGCTCgttgctctctctcagactccggctgctgatgcttgATCCACGATTCAAACCATAGTGACTGCCTTAGTTTGCTGGACCAGGTGGAGCCAAAATTAGAGCTGAGCTGAGAGTTTCATCAGCTCTTCGTAATTAAAGTACACTGATTATAGCTATGttttgattttaattcatttttcactcattttcagACTCCCCTCCTAAAGTTGAAAGTGGCCAATAGAAATCTGTATAATAGCcatataatacagctctggaaaaaataagagacatttcctcatttagagcatttatttgcagaaa

Function

symbol description
clcn7 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including EVL; blastomere; head; periderm; and pleuroperitoneal region. Used to study lysosomal storage disease and osteopetrosis. Human ortholog(s) of this gene implicated in autosomal dominant osteopetrosis 2 and autosomal recessive osteopetrosis 4. Orthologous to human CLCN7 (chloride voltage-gated channel 7).

NR:

description
PREDICTED: H(+)/Cl(-) exchange transporter 7 isoform X1

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05016 CLCN7; chloride channel 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245554.2 True 4112 mRNA 0.47 25 28905061 28933768

Neighbor

gene id symbol gene type direction distance location
eci1 NA coding downstream 75547 28821968 ~ 28829514 (-)
naa60 naa60,nat15,LOC107690248,LOC107568044,LOC107685925 coding downstream 92937 28802090 ~ 28812124 (-)
tmem114 tmem114 coding downstream 242759 28633776 ~ 28662302 (-)
LOC103034330 sept12,LOC107733855,LOC107568113,LOC107690244,LOC107738615 coding downstream 880260 27852176 ~ 28024801 (-)
LOC103033698 LOC108436663,LOC108256318,LOC105900006,LOC106596483,LOC107738612 coding downstream 1275815 27604572 ~ 27629246 (-)
ptx4 NA coding upstream 858 28934626 ~ 28943090 (-)
usp7 usp7 coding upstream 32717 28966485 ~ 28995105 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding upstream 377642 29311410 ~ 29583262 (-)
socs1 socs1 coding upstream 944273 29878041 ~ 29880914 (-)
tmc5 tmc5 coding upstream 1008655 29942423 ~ 29960792 (-)
G14415 NA non-coding downstream 4961 28899353 ~ 28900100 (-)
LOC111193842 NA non-coding downstream 89183 28813041 ~ 28815878 (-)
G14394 NA non-coding downstream 189778 28697362 ~ 28715283 (-)
G14339 NA non-coding downstream 274247 28630590 ~ 28630814 (-)
G14333 NA non-coding downstream 354357 28550453 ~ 28550704 (-)
G14417 NA non-coding upstream 16977 28950745 ~ 28951228 (-)
G14420 NA non-coding upstream 26573 28960341 ~ 28963827 (-)
G14425 cunh16orf72,LOC103025273,LOC105900007,LOC107685917 non-coding upstream 73264 29007032 ~ 29011028 (-)
G14430 NA non-coding upstream 130556 29064324 ~ 29064730 (-)
G14433 NA non-coding upstream 167148 29100916 ~ 29101222 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 108603 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 1866315 27023495 ~ 27038746 (-)
G14113 NA other downstream 2002348 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 2071448 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 2206268 26670119 ~ 26698793 (-)
emp2 emp2 other upstream 679718 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 823919 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 955031 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 1327250 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 1740292 30674060 ~ 30725921 (-)

Expression


Co-expression Network