LOC103034575 (LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060)


Basic Information

Item Value
gene id LOC103034575
gene name LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31106308 ~ 31125146 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245593.3
GCCGCCATTTTAAGGTCCAGTTCGCAGCTCCACAGCGGCGGGGCGAGCAGGAGCGGCAGCCGGATCTGGAGGAGAGAATACCGGGTGGTCCGGCTGTTTTATTACGGTTTTAACGTTCGTACGGTGCTATTTACGTCGTGGACGAGTGTAAAAACGGAGTGTCGGTTTTTATATAAGATTTGGAAGTAGTTCGGACTGAGGGCTTGGCAGCACGATGGCTACCCAGTCTGATCTGATGGAGCTGGACATGGCTATGGAGCAGGACCGGAAAGCTGCAGTCAGCCACTGGCAGCAGCAGTCCTATCTGGACTCTGGTATCCACTCTGGGGCCACCACCACCGCACCCTCCCTTTCTGGCAAAGGCAACCCAGAAGAGGAGGATTTGGACAACCAGGTGCTATATGACTGGGAGCAAGGCTTCAGCCAGCCCTTCACCCCAGAACAGGTGGCAGACATGGATGGCCAGTATGCCATGACCCGTGCCCAACGCGTGCGTGCCGCCATGTTCCCCGAGACCCTGGATGAAGGCATGCAGATTCCCTCAACTCAGTTTGACTCCGCCAACCCCACAAATGTCCAGCGACTGGCAGAACCCTCGCAGATGCTCAAACATGCTGTTGTCAATCTCATCAACTACCAGGATGATGCTGAACTGGCCACCAGAGCCATCCCTGAGCTCACAAAGCTCCTCAACGATGAAGACCagGTGGTGGTGAACAAGGCGTCTGTGATGGTGCACCAGCTCTCCAAAAAGGAGGCCTCGCGCCACGCAATCATGCGCTCTCCTCAGATGGTATCTGCCATCGTCAGGACGATGCAGAACACCAACGACGTGGAGACCGCTCGCTGCACAGCCGGAACACTGCACAACCTCTCCCACCACCGAGAGGGACTGCTCGCCATCTTCAAATCCGGAGGCATCCCTGCTCTCGTCAAGATGCTGGGATCTCCAGTAGACAGTGTTCTGTTCTATGCCATCACCACACTGCACAACCTCCTCCTGCACCAAGAAGGGGCGAAGATGGCCGTGCGTCTGGCTGGCGGCCTGCAGAAGATGGTGGCTCTTCTCAACAAGACCAATGTCAAATTTCTTGCCATCACCACAGACTGCCTACAGATCCTGGCTTACGGCAATCAGGAGAGCAAgTTGATAATCTTGGCAAGTGGTGGACCCCAAGCCCTGGTGAACATCATGAGGACCTACACATACGAGAAACTGCTGTGGACCACCAGCCGTGTGCTGAAAGTGCTGTCTGTCTGCTCCAGTAACAAACCCGCCATCGTGGAGGCTGGAGGTATGCAGGCTCTGGGACTTCACCTGACAGACCCCAGCCAGCGTCTAGTACAGAACTGCCTCTGGACCCTCAGAAACCTGTCAGATGCTGCAACTAAACAGGAGGGTATGGAGGGTCTCCTCGGCACCCTGGTGCAGCTCCTCGGCTCAGACGACATCAACGTGGTCACCTGCGCCGCTGGCATCCTCTCCAACCTCACCTGCAACAACTACAAGAATAAGATGATGGTGTGCCAAGTGGGCGGAATCGAGGCGCTGGTTCGCACAGTGCTGAGAGCCGGAGACCGGGAGGACATCACAGAGCCCGCCGTCTGCGCCCTCCGCCACCTCACCTCCAGACACCAGGACGCAGAGATGGCCCAGAATGCTGTGCGCCTCCACTACGGCCTCCCTGTGGTGGTCAAACTGCTGCACCCGCCCTCACACTGGCCTCTTATTAAGGCCACCGTTGGTCTGATCCGTAACCTGGCACTGTGTCCAGCCAATCACGCGCCTCTGCGTGAGCAGGGTGCCATCCCCCGATTGGTCCAGCTGCTGGTGAGGGCGCACCAGGACACCCAGAGACGCACCTCCATGGGCGGCACCCAGCAACAGTTTGTTGAGGGAGTCAGGATGGAGGAGATCGTGGAGGGCTGCACCGGGGCGCTCCACATTCTGGCCAGAGATGTGCACAACAGAATCGTGATCAGAGGACTCAACACCATCCCTCTGTTTGTACAGCTGCTGTACTCTCCAATTGAAAATATCCAGCGCGTGGCCGCAGGCGTGCTGTGTGAACTGGCGCAGGATAAGGAGGCGGCTGAAGCTATCGAGGCGGAGGGAGCCACCGCACCCCTCACTGAACTGCTCCACTCCAGGAACGAGGGAGTGGCCACATACGCGGCAGCAGTGCTGTTCCGCATGTCAGAAGACAAACCTCAGGACTATAAGAAACGCTTGTCTGTGGAACTGACCAGCTCCCTGTTCAGAACAGAGCCCATGGCCTGGAACGAGACTGGAGATATGGGTCTGGATATCGGAGCACAAGGAGAACCTGTTGCATACAGAGCTGATGACCCCAGCTATCGCTCCTTCCACTCCGGCTACGGTCAAGACGGCCTGGGAATGGACGGCATCCTCGAGCACGAGCTGGCCGGCCACCACCCTGGAGCGGATTACCCTGTAGAGGGTCTGCCTGACCTCGGCCACGCCCAGGACCTGATGGACGGCCTGCCTCCCACAGACTCCAATCAGCTGGCCTGGTTCGACAcagacctttaaaaaacactcacAGTCTGGACGAAGTGACGCTCTTTTTGTCTGAGTGAAACTGCATTGTGATTTTTGCCTGAGGAGTGACGGGACGTTTGCAGAGGGTGGGCGAGCATATCGGAAAGTGCCtgacacgacacacacacacttacacaaacttacacacacacacacacacacacacaaacaaatacatgcatacaaactatatatatacacacacacacacacacatgcacactcgttggggaggagagggaggagTTTCTACacgaagaggaagaggaaatgAAGCTGAACCTTTTTTCCCACCCTTTGAGTTTCCTCCCTCTTGTTCCagacattttgtttgttttttctttctgccCTGGATGGAGGAAGGAAGTTGCGAGGGATTTGAGGAGCGGATGCTCTTGACGATTGCACCAGAGCGAGATCATAAGACGGAACTGTAAAACCTTTTTAGCCTGgtttttatttcaccttttttctttttaatttcttttttaccTTCTTTTATATCATCGGTCTTTATGGTACTGACCCCTAGCTTGGTTTGATCTCTAGTCTGTATTCATTAACTTcactttctgttttattttttctgtttcagcAGTAATTTGTATTCCATTTTATAACGTCTTTCTGTAGTGTTGAGTTCTAGTGGAGTTGCCTCTGTTGGTTTCTGAATCTTTCTCACGTAACGGTGTCGAACACTAATATCAGTTCTTATGTAATCTGACTGAAAGTGTAACAATGTgtagctttctttttttctttgttttatttcctttttttatacgATCAGCTGTTCAAATGGGGTGTACTGGGGTGGGAGAAATATATGCATTCTTTATTAAAATACCTAAAAAACCAAGTGAAGAGAAACTGTTTTCAGTGTAAACGGTTGTTCCAAAAAGGGTTGCGGAGGGGGGGTGAACTGAGGGTGGGCGGGGGTGCAGGCAGTAGCACAGAGACAAATCTTTCTTTTCTATCATGCTATCCTGAGGTAGTACCGATTTAAAGCAACGTGCAGTCGTCAGTGGTTTGCCTGCGTGGCCTATTTTGGGAACATGGTTGATGACAAggttaaacaataaaagacttTTATTCCA

Function

NR:

description
catenin beta-1-like

GO: NA

KEGG:

id description
K02105 CTNNB1; catenin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245593.3 True 3660 mRNA 0.53 16 31106308 31125146

Neighbor

gene id symbol gene type direction distance location
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding downstream 23016 31058768 ~ 31083292 (-)
LOC103046348 NA coding downstream 136150 30967269 ~ 30970158 (-)
LOC111193897 LOC108413061 coding downstream 139366 30964548 ~ 30966942 (-)
LOC103046043 NA coding downstream 143776 30956193 ~ 30962532 (-)
LOC111193890 NA coding downstream 152192 30946765 ~ 30954116 (-)
LOC107197536 LOC107086207 coding upstream 91086 31216232 ~ 31222423 (-)
pdlim7 pdlim7 coding upstream 755648 31880794 ~ 31943297 (-)
higd2a higd2a coding upstream 830460 31955606 ~ 31958456 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding upstream 848446 31973592 ~ 31995512 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding upstream 920963 32046109 ~ 32055172 (-)
G14834 NA non-coding downstream 57701 31048356 ~ 31048607 (-)
G14820 NA non-coding downstream 122277 30983540 ~ 30984031 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 177919 30924840 ~ 30928389 (-)
G14778 NA non-coding downstream 201610 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 338488 30766362 ~ 30767820 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 55840 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 56680 31181826 ~ 31229953 (-)
G14879 NA non-coding upstream 87423 31212569 ~ 31214056 (-)
G14882 NA non-coding upstream 130839 31255985 ~ 31256204 (-)
G14883 NA non-coding upstream 135622 31260768 ~ 31260986 (-)
G14839 NA other downstream 50805 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 182221 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 183059 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 213660 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 380387 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 997076 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1688902 32814048 ~ 32820804 (-)
G15497 NA other upstream 3009446 34134592 ~ 34136732 (-)
evc2 NA other upstream 3026677 34151823 ~ 34172017 (-)
G15498 NA other upstream 3116180 34241326 ~ 34242318 (-)

Expression


Co-expression Network