higd2a (higd2a)


Basic Information

Item Value
gene id higd2a
gene name higd2a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31955606 ~ 31958456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245599.2
GTAGCTGCAGTAGCAGGAGGAGGCCTGTAGGGGCggtgcagtgcagtgtgtgtatgggtgtgagTACGGAGCTCAGCAGTAGAGGCAGTAGCCGGACTGAGTATGGCGGTCGCTTCCAGCGCGGTACAGGAGGAGCGGGCTGGGCGGACAGCGCTGCCCGGAGCCGCAGCCTTTAACCCGGGCAGCCCGCCGGTCATAGAGGGCTTCACCCCGCTGCCCCGGCAGAAAGAGGAGAGCTTTAAGGAGAAGTTTCTCCGCAAAACCAAGGAGAACCCGTTCGTCCCTATCGgTTGTTTGGGGACGGCAGGAGCTCTGACGTACGGCCTTCGGGCCTTTAAACACGGCAAAACCCACCAGTCTCAGATGCTCATGCGGACACGTATCTTCGCCCAGGGGTTCACCGTCATTGCCATTATAGTGGGCGTGGCAGCTACAGCACTGAAATCCAAACAGTGAGAGACGAGAAGCACCACAACCAGCCACAACTCCCTATTAAAGAGCCTTACCTGATCCAGACTGGTTTTAGATTTAATGTTGATGTTTTGTTCTGTTGAAGCATTTAGAGATCTGTTTAGAGAGAATCGGACCCCGTGTGCTACTCTAGGACTGGAATTGAAGGTGTCTCATCCAATGGGACATCTTGAGGAACGTCTCTGTGGACACAGTAAAAAGGTGTGAAGACATCCTTCCTTTATTTCCTACTGAcagtaggatttttttttattttcctcttcCTTTACATATATTTGTACCTCTGAGTCAAAGAGTTAATGTATATTAAAGAGATTTAAGGCCTAA

Function

symbol description
higd2a Predicted to be involved in mitochondrial respirasome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to several human genes including HIGD2A (HIG1 hypoxia inducible domain family member 2A).

NR:

description
HIG1 domain family member 2A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245599.2 True 798 mRNA 0.51 2 31955606 31958456

Neighbor

gene id symbol gene type direction distance location
pdlim7 pdlim7 coding downstream 12309 31880794 ~ 31943297 (-)
LOC107197536 LOC107086207 coding downstream 733183 31216232 ~ 31222423 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding downstream 830460 31106308 ~ 31125146 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding downstream 872314 31058768 ~ 31083292 (-)
LOC103046348 NA coding downstream 985448 30967269 ~ 30970158 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding upstream 15136 31973592 ~ 31995512 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding upstream 87653 32046109 ~ 32055172 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding upstream 115710 32074166 ~ 32119158 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding upstream 202363 32160819 ~ 32172940 (-)
polr2b polr2b,LOC102791558 coding upstream 663725 32622181 ~ 32638918 (-)
G15022 NA non-coding downstream 75763 31877805 ~ 31879843 (-)
G15037 NA non-coding downstream 78645 31845182 ~ 31876961 (-)
G15023 NA non-coding downstream 334309 31529337 ~ 31621297 (-)
G14885 NA non-coding downstream 687513 31267660 ~ 31268093 (-)
G14883 NA non-coding downstream 694620 31260768 ~ 31260986 (-)
G15063 NA non-coding upstream 36177 31994633 ~ 31995062 (-)
G15074 NA non-coding upstream 74595 32033051 ~ 32040230 (-)
G15078 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 non-coding upstream 83885 32042341 ~ 32061852 (-)
G15049 NA non-coding upstream 110706 32069162 ~ 32086925 (-)
G15050 NA non-coding upstream 162820 32121276 ~ 32133782 (-)
G14839 NA other downstream 900103 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1031519 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1032357 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1062958 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 1229685 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 163766 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 855592 32814048 ~ 32820804 (-)
G15497 NA other upstream 2176136 34134592 ~ 34136732 (-)
evc2 NA other upstream 2193367 34151823 ~ 34172017 (-)
G15498 NA other upstream 2282870 34241326 ~ 34242318 (-)

Expression


Co-expression Network