abhd18 (abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096)


Basic Information

Item Value
gene id abhd18
gene name abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32046109 ~ 32055172 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245604.3
CAGGCACCACAGAGGAAGAGGGGGGCACCCGCACTGCATGCCGGGACGGCGGAGCTGCAGCGAGGCGGAATTCGCCCTCTGAGATGAGAAACAGCCGCCAGAGTCTCGATCCGCGCTTCAGGTGGAGATGACAGGTTCTTGCCAATGGGTGTGAGCCGGCTTGATGTTCTCTACAGAAAGCTCCTCCTCACCAAACTCTTCATCCAGGGATGGGGAAAGCCAGAAGACCTGAAAAGAATATTTGAGTTCCGGAAAATCATTGGCAACCGAGACAAGTGTAAACACTTGGTACCCCGGGATTATCCAGTGTTTACTGATAAGGTGGAGGATCACTCCGACTGTAAAATCCACAATGGACACTTCATATCTCCACTGGAGCACCTGGTCCCAGGCGTTCTGCCTGCCGAGTCTGTTAAAGCCAGGTTCCAGTTTATAGTACCCAAACGATGGAGGAAGCACAGACCAGTCTGCATCCATCTGGCTGGAACTGGAGACCATtttttctggaggaggagaaccCTCATGGCCAGACCCATGATTAAAGAAGCAGGAATGGCCTCCTTACTGCTGGAAAACCCTTACTATGGATACAGAAAACCCAAAGATCAAGTACGTTCCAGTCTGAAGAACGTCTCGGACCTGTTCGTGATGGGCGGAGCTCTTATACTGGAGTCTGCGGTTCTGCTTCACTGGTTGGAGCGGGAGGGCTTCTGGCCGCTGGGCATGACCGGCATCTCTATGGGAGGCCATATGGCATCTTTGGCCGTCACAAACTGGCCCAAGCCGATTCCTCTGATACCCTGTCTGTCCTGGACCACTGCTTCCAACGTTTTTACTACAGGAGTTTTAAGTAAAGCTGTAAACTGGAGACAGCTGGAGAAGCAGTACgccacacacactgtatacgaGAAGGAGATCATCCACATGCTGGAGTACTGTGGGACAGATTCATTCCGGATGGGTCAGGACTTCGTGAGGAACTCCCCAGGCAGTTTCGAGAAGCTCTCTGGTCTGGCCCTGTCCCGGGACCTGCTGGGTCTGAGCGGCGCGGAGGGCGAGCAGGTGGGGGGCAGGCCAGGGGCCGGCGGGCGAGGTCCGGACCCCAGCCTGCTGCTGCAGCGGAGGGACGGGGACGGGCTGGACCGCATGCTGTCGGCCGTGAGCAGCAGCCGGCCGCACATGGACATGCTGCACGCCAAGAACGTCAGCCCCGGAGCGGGACAGCGCCACTCCCTGCAGAGAGAGTCCCTCTGCTTCATGAAGGGGGTCATGGACGAGTGCACACACATCGCCAACTTCTCAGTGCCGGTAGATCCCAGTCTGATCATCATTGTTCAGGCCCGGGAGGACGCGTACGTCCCTCGTACCGGTGTACGCAGCCTGCAGGAGATCTGGCCCGGCTGTGAGGTTCGCTACCTGGGAGGAGGACACGTCAGCGCCTACCTGTTCAAACAGGCCATCTTCAGGAAGGCCATTTATGATGCCTTTGACCGGTTTGTTCAGAAGTATCCTCTGCTATAGCCACGGAGAACGCTGAATATACTGTTATCCAGCAGACTGAGCGAAGACCTCGTAACTCCGGAACTAGCCGTGTGGTGCTACTGAAGACTGACAGCGAGTGTAGTATTTACAGAAATAGAGTATTTTGATTATAGAGATTTATAAACTGTGCTCTTATCAGTTCACATCGTTTAAAACGCCAACCAACACCAGACCTCTCAGATCACCGTCTGCATACCTGCGCTGCCTTTCACACTGTCTGTCATTACTGAAGCACATTTCACTTACAGTAACTGCACCTCAAATCACTGCCAAACCTGAGGTATCTCATCATTCTGCATCATGTGATCGTATTTATAATTGaattgtattaataataatgacgACTCTAAATCGGTATCATCCTTCCCAATTGTGAACACTTGGcctaatatatataaagatataaaaagtCCTTCATGTCTCTGTTTCTCCactcaaaaataataaagactGACCTGAGTTGACCTTTA

Function

symbol description
abhd18 Orthologous to human ABHD18 (abhydrolase domain containing 18).

NR:

description
protein ABHD18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245604.3 True 2012 mRNA 0.52 13 32046109 32055172

Neighbor

gene id symbol gene type direction distance location
rnf44 rnf44,LOC107749756,LOC107677379 coding downstream 50597 31973592 ~ 31995512 (-)
higd2a higd2a coding downstream 87653 31955606 ~ 31958456 (-)
pdlim7 pdlim7 coding downstream 102812 31880794 ~ 31943297 (-)
LOC107197536 LOC107086207 coding downstream 823686 31216232 ~ 31222423 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding downstream 920963 31106308 ~ 31125146 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding upstream 18994 32074166 ~ 32119158 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding upstream 105647 32160819 ~ 32172940 (-)
polr2b polr2b,LOC102791558 coding upstream 567009 32622181 ~ 32638918 (-)
rest NA coding upstream 593891 32649063 ~ 32658650 (-)
LOC103031569 NA coding upstream 679113 32734285 ~ 32750765 (-)
G15074 NA non-coding downstream 5879 32033051 ~ 32040230 (-)
G15063 NA non-coding downstream 51047 31994633 ~ 31995062 (-)
G15022 NA non-coding downstream 166266 31877805 ~ 31879843 (-)
G15037 NA non-coding downstream 169148 31845182 ~ 31876961 (-)
G15023 NA non-coding downstream 424812 31529337 ~ 31621297 (-)
G15049 NA non-coding upstream 13990 32069162 ~ 32086925 (-)
G15050 NA non-coding upstream 66104 32121276 ~ 32133782 (-)
G15090 NA non-coding upstream 292178 32347350 ~ 32348794 (-)
G15095 NA non-coding upstream 395186 32450358 ~ 32450563 (-)
G15206 NA non-coding upstream 509190 32564362 ~ 32621435 (-)
G14839 NA other downstream 990606 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1122022 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1122860 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1153461 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 1320188 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 67050 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 758876 32814048 ~ 32820804 (-)
G15497 NA other upstream 2079420 34134592 ~ 34136732 (-)
evc2 NA other upstream 2096651 34151823 ~ 34172017 (-)
G15498 NA other upstream 2186154 34241326 ~ 34242318 (-)

Expression


Co-expression Network