LOC103033311 (si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301)


Basic Information

Item Value
gene id LOC103033311
gene name si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 13631779 ~ 13671682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251017.3
GAgggagcagaaagagagagagggagggagggagcaaGGCACAGGGGGGAGAGACCGAGCCACCTCACCAAACATTgacagtgagtgaaagaagctgcggagaagagagggagaaagagagagagggagagaaagagagatagaggaagatagggagagagagagagagagagagagagagagagagagagagagggagtggtgGACTTGGTGATCTACAGAGTGGAGTCTTAAGTTTCCAGAAGAAAAGAGACTGaataagtaagtcagtaaactCACAGAGAAAAAGTTTGAGAGGTCATCATGTCATCACCCCCTCCGGAGAACAGCCCAGAGGATGCCAACCACCAGAGCTTCTGGATGccggGGAACTACCAGCGGACGGTAAAGAGAACAGAGGATGCGTTCCAGGCGTGTAATGACATAGTGACGTGTTTTCAGGAGCGAGCACGTGTGGAGCGACAGTACGCCCAGCAGCTCAGCGAGTGGACTAACAAGTGGAAGCCCATAGTGGATGCCAGTCCTCTGTATGGCTCTCTCCTGCAGGCGTGGCAGTGTTTCCTCTCTTCCGCTGATCGCCTCTCCACTCTTCACTCCTCCATCTGTCGCTCGCTCGTGTCGGAGGATGGAGACCGGGTCAGGACTTGGCAGAAGGAGACCTTCCATAAGAAGATTTTTGGAGGATTCAGGGAGTCGCAGGACTTTGACACAGGATTTGCACGTGCTCAGAAGCCCTGGGCCAAAAGACTCAAGAagctggagAAGGCGAAGGCTGCGTTCCACAAGGCGAGCCGTAAGGAGCACACAGCCCGGGAAAGAGAAGCTCATGCTCAGGGAAACCCTGACATCGCCATAGAGAAACAGAGGAAGATCCAGGAGGAGAGAGAACTCGCTCACCAGGAGACAGAGAAAgttagAGCCCGCTATGAGAAGGTTCTGGAGGAAGTGACACGTTACGCCCCGCGCTACATGGAGGAAATGGAGTCCATCTTTGACCAATcacaggaggaggagaggaagaggatcAGCTTCCTGAAGCAGGCCTTCTTGTCCATCCACAGACACCTGGACGTCACCAACAACGAGAGtgtGAAAGCTGTGTATAATGAGCTCCACGACACTCTGATGAGCATTAACGAGCAGGAGGACCTGCGCTGGTGGAAGAACACTCACGGTCCAGGAATGCCCACTGACTGGCCCCAGTACCAGgatTGGGTACCAGacaagaaacataaaaaaggaaagaaagaggtgGTGGAGACGAAAGCAGTGGTTATGGAGAGGAGtgtaatGATTGGTGGAGTGAGGGTCAGAGCGCTGTACGATTATGTTGGACAGGAGCCAGACGAGCTGTCCTTTAAAGCTGGTGAGGAGTTTCTGAAGattgaggatgaggatgatcaGGGCTGGTGTAGAGGAATGATGGATGGAGGAAGAGAGGGACTCTACCCTGCTAACTATGTGGAAGTGGTGTAGGGCTgcaggagacacacacacacacacacacacacacacacacacacacacacaaacacattctctctgtctctccataTGTTCCAGTGAAGGACTTTGAGTGTATTTGCATTCACGTTAATGGTGCATCTGGTGTATAATTAAAAAGGAAGTCCACTAATGATTTCAAATTGATAATTAGGAGGTTAACATGTACAATTCTCAGTTCTTGAGAATTTTTTTGAAGTGGTGTTGAATGAGTAAATCATCTGATGCATTTAATACCTGCCAAAATTCATCCCATGAGGATTGAATAGTCCTGTCAACTTTGATTTGTGCCTTTAAGGCGaactcttgagatggcagcagtatgtggatgagcactgTCCTGCTGAAATAACGCACTACAGTGTTTTTTCAGAAaaggtaccgtatttttcgcactataagactCACTTAAAAGGTTTTACTTTTccaaaaaatcaacagtgcgccttataatccaggtgaaccttatgtatgaattctaccagtcggattgtaaggagcagtgttattaagtttcagtttagttctccagcaccgagactgaagcagtaatagcattagcagctaagcGCTAGCCCTTTTGCCGTTCtcccctgctagcactgctggagcagcattagctgctaaccacgcaaAATGCTAGCTCTGTTGCCATTCAGATGTGAATATTACCGGACTGTTGTCTGCTGCTAGCCTTGGctaccactgctggagcagcattagcattagccgctaactgtgctaagctctagctcttttgccattgaagggtgagtata

Function

symbol description
si:ch211-51c14.1 Predicted to enable phospholipid binding activity. Predicted to be involved in cytoskeleton organization; plasma membrane tubulation; and regulation of endocytosis. Predicted to be active in endosome and plasma membrane.

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251017.3 True 2282 mRNA 0.49 10 13631779 13671682

Neighbor

gene id symbol gene type direction distance location
syt3 syt3,LOC107551154,LOC107563990 coding downstream 90854 13424026 ~ 13540925 (-)
med25 med25 coding downstream 243840 13338001 ~ 13387939 (-)
LOC111193378 NA coding downstream 535323 13093203 ~ 13096456 (-)
emc10 emc10,LOC107551156,LOC107729566,LOC107687623 coding downstream 742798 12876778 ~ 12888981 (-)
LOC111193363 LOC108434907 coding downstream 767004 12826988 ~ 12864775 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding upstream 12197 13683879 ~ 13964838 (-)
LOC103035240 LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063 coding upstream 445909 14117591 ~ 14148282 (-)
LOC103035550 paqr4,paqr4a,LOC105897660,LOC106601588 coding upstream 494758 14166440 ~ 14197240 (-)
LOC103039514 LOC108427305 coding upstream 576992 14248674 ~ 14292162 (-)
LOC111193418 NA coding upstream 659320 14331002 ~ 14333447 (-)
G10303 NA non-coding downstream 45860 13585450 ~ 13585919 (-)
G10302 NA non-coding downstream 47167 13584367 ~ 13584612 (-)
G10284 NA non-coding downstream 223173 13399883 ~ 13408606 (-)
G10232 NA non-coding downstream 418621 13212557 ~ 13213158 (-)
G10191 NA non-coding downstream 510705 13120819 ~ 13121074 (-)
G10379 NA non-coding upstream 2273 13673955 ~ 13675293 (-)
G10413 NA non-coding upstream 245442 13917124 ~ 13917838 (-)
G10429 NA non-coding upstream 338494 14010176 ~ 14010413 (-)
G10430 NA non-coding upstream 350005 14021687 ~ 14021889 (-)
G10561 NA non-coding upstream 634590 14306272 ~ 14306530 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 338901 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 814593 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1953671 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 2287517 11340140 ~ 11344262 (-)
G9469 NA other downstream 3236299 10393462 ~ 10395480 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 367176 14038858 ~ 14083107 (-)
G10560 NA other upstream 569379 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 947694 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 1116388 14788070 ~ 14797643 (-)
G10767 NA other upstream 1251283 14922965 ~ 14923959 (-)

Expression


Co-expression Network