LOC103035240 (LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063)


Basic Information

Item Value
gene id LOC103035240
gene name LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14117591 ~ 14148282 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251024.3
GCTCTCCGACTTTCACTTCCTCTCTGTGATCTGAACGCACATCTCCTGCTGCCAGTGCCGCCCTGCGCTCACTGCACACTTCTCTCTCTGCGCCTGAACCAGCCAGAGCCCAGCACTCAGGCCAGCACCCAACGCCCAGCACTCGGCCTTCCACGACTCCTCATCTGCAGGTCATCATGTCCAGGAAGGTGGTCCGGTCCAGTAAGTTCCGTCATGTCTTCGGTCAGGCGGTTAAGGCTGACCAGTGCTACGATGACATCAGGATCTCTCAGATGACCTGGGACAGCAACTTCTGCTCCGTTAACCCCAAATTCGTCGCCATGATCGTGGACGCCAGCGGAGGAGGAGCCTTCATCGTCCTGCCGCTCAGCAAGACTGGCCGTATCGACATGTCCCAGCCCACCGTCTGCGGCCACACTGGACCCGTCCTGGACATCGAGTTCTGCCCACACAACGACAACATCATCGCCAGCGGCTCTGAAGACTGCAGTGTCATGatctgGGAGATTCCAGAAGGTGGTCTGACGCAGCCTCTGAAAGAGCCAGTAGTGAAGCTGGATGGTCACTCCAAACGTGTGGGCATTCTCAGCTGGCACCCCACAGCACACAATGTCCTTATGAGTGCAgGCTGTGATAATGTGGTGATCCTGTGGAACGTGGCGAGAGGTGAGGCAGTGGTCAAGGTGGACTCTGTGCACACCGATCTCATCTACAGCGCCTGCTGGAACACAGACGGCTCACGCATCCTCACCTCCTGCAAGGACAAGAAACTGCGCGTCCTGGATCCCCGCAAGGGCACCGTCATCGCCgagAAGGATAAGCCTCATGAGGGCTCCAGGCCGGTCAGGGCTGTGTTTGTGTCCGAGGGGAAGATTCTGACCACTGGTTTCAGcagaatgagtgagagacaggTGGCGCTCTGGGATCCGgACAGCTTTAATGAGCCGCTGACTCTGCAGGAGTTGGACACCAGTAGTGGAGTTCTGCTGCCCTTCTTTGACCCAGACACTTCGGTCGTTTACCTGTGCGGAAAGGGCGACAGCAGTATTCGTTACTTTGAGGTGACGGACGAGGCTCCTTACGTCCATTATCTCTCCATGTACAGCAGCAAAGAGAGCCAGAAGGGGATGGGCTACATGCCCAAGAGAGGACTGGAGGTCAACAAGTGCGAGATCGCCAGATTCTATAAACTCCATGAGAGGAAGTGTGAGCCCATTGTAATGACAGTGCCACGAAAGTCTGACCTGTTCCAGGAGGATCTGTATCCAGACACTATTGGACCGGAGCCATCGGTGGAGGCTGATGAATGGTTCGCTGGTAAAGAGGGGAAGCCCATCCTCATCTCTCTGAAGGACGGCTTTGTGGCCACCACCAAAAACAAAGAGTTTAAGGTCATCAAGAGCCTCATGTCCACCACAACGGCCTCCTGCGGCCAGCGGCAGGGCAATGGCGAGgatGTGCAGGCGCTGCAGAATGAAGTGAAGGAGTTGAGGGAGATCGTGGAGGAGCTGAGTAAACGAGTGAGCGAGCTAGAAAGCAAAAACTGAGGGCCGGAGCGACGGACTCAACTGgaaatgtgaaaacaaaaaccacacaaGTGTTTTAAGGGTAGAACCAAGGGGGGAGAGAGGGGATGGGGGGCTGTCGTGTTTTATGAAGGGATAAAAAGAACATTGCAGCTTTTTACAAACCAAATATCGCCTTTCAGGgatttgaatttattttctagagttttttaagatgtttttccAAACTCATTTTAATATATGTCAAAATAGAGCATTTCAATAAATGtcaacaatattttaaacattt

Function

NR:

description
coronin-1A-like

GO:

id name namespace
GO:0051126 negative regulation of actin nucleation biological_process
GO:0050918 positive chemotaxis biological_process
GO:0001845 phagolysosome assembly biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0032796 uropod organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0001891 phagocytic cup cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0030027 lamellipodium cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13882 CORO1A; coronin-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251024.3 True 1815 mRNA 0.53 11 14117591 14148282

Neighbor

gene id symbol gene type direction distance location
LOC103038885 shank1,LOC108427331,LOC107732841 coding downstream 152753 13683879 ~ 13964838 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding downstream 445909 13631779 ~ 13671682 (-)
syt3 syt3,LOC107551154,LOC107563990 coding downstream 576666 13424026 ~ 13540925 (-)
med25 med25 coding downstream 729652 13338001 ~ 13387939 (-)
LOC111193378 NA coding downstream 1021135 13093203 ~ 13096456 (-)
LOC103035550 paqr4,paqr4a,LOC105897660,LOC106601588 coding upstream 18158 14166440 ~ 14197240 (-)
LOC103039514 LOC108427305 coding upstream 100392 14248674 ~ 14292162 (-)
LOC111193418 NA coding upstream 182720 14331002 ~ 14333447 (-)
armc5 armc5 coding upstream 193638 14341920 ~ 14350288 (-)
LOC103037078 LOC103037078,LOC108427313 coding upstream 206070 14354352 ~ 14360091 (-)
G10430 NA non-coding downstream 95702 14021687 ~ 14021889 (-)
G10429 NA non-coding downstream 107178 14010176 ~ 14010413 (-)
G10413 NA non-coding downstream 199753 13917124 ~ 13917838 (-)
G10379 NA non-coding downstream 442298 13673955 ~ 13675293 (-)
G10303 NA non-coding downstream 531672 13585450 ~ 13585919 (-)
G10561 NA non-coding upstream 157990 14306272 ~ 14306530 (-)
G10595 NA non-coding upstream 544500 14692782 ~ 14694894 (-)
G10649 NA non-coding upstream 559051 14707333 ~ 14708613 (-)
G10654 NA non-coding upstream 623048 14771330 ~ 14771618 (-)
G10782 polr3d non-coding upstream 871009 15019291 ~ 15020115 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other downstream 34484 14038858 ~ 14083107 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 824713 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 1300405 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 2439483 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 2773329 11340140 ~ 11344262 (-)
G10560 NA other upstream 92779 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 471094 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 639788 14788070 ~ 14797643 (-)
G10767 NA other upstream 774683 14922965 ~ 14923959 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other upstream 812550 14960832 ~ 14981569 (-)

Expression


Co-expression Network