rras (rras,LOC107730736,LOC107658490,LOC107583016,LOC107554112)


Basic Information

Item Value
gene id rras
gene name rras,LOC107730736,LOC107658490,LOC107583016,LOC107554112
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15194863 ~ 15208007 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251062.3
ACGGCGGAGGGAAAAAAGTAGCTCCTGGCTatgaaaaaaagtaagtaagaCGCAGAGAGAGGGTCGAGTCAAAAATCAGTAAGAAAAAAAGGGCGAGAAGACCTGAAACTGGCTCTGATCTGAGACTGACAATGGTTTGAGCTTTACCGCGCTGATATCCGCGGTTTAGACCAGCAGAAGAGCTCGTTTTAACTTTCTATCGTTTGACTTTGAGTGGTAAACTCAGCAAACCGAAGGCGGCTGCGGAAGGAAAGACTGAGCAAGCCATGTCGTCAGAggaggagagatataagttggTGGTGGTGGGCGGAGGTGGTGTAGGGAAAAGTGCACTGACCATCCAATTCATCCAGTCTTACTTTGTGTCCGACTATGACCCCACCATTGAGGATTCCTACACCAAAATCTGCACAGTGGACGGGAAGGAGACGCGATTAGACATTCTGGACACAGCAGGTCAAGAAGAATTTGGAGCAATGAGGGAACAGTATATGCGCTCCGGAGAGGGCTTTCTACTGGTCTTTGCCCTGAATGACAGTGGCAGTTACAATGAAATCCAGAAGTTTCACACTCAGATTCTGCGAGTAAAGGATCGAGACGACTTCCCGATGGTCCTCGTTGGCAACAAATCAGATCTGGATCAGCACAGAGTGGTCTCCAGAGAAGAGGCCATGGGGTTTGCCAGGGAAAACCGGATCCACTATATGGAGTCATCAGCTAAGAACCGCCACAATGTGGACGAAGCTTTTCTGGAGGTGGTTCGAGCAATAAGAAAATTTCAGGAGACAGAAAGTCCTCCTATGCTCATGAATTCCCCTAGTAAGCAGCGAAAGGGCTGTCCCTGCTCCATCCTCTGACTGCGTGTCCACACTGTTGCCATGGAGACTGAAGCCCCACCCTCTTGTCTGGTGCCTTATATgtctgcactgtgtgtgtgtgcttaacagagtgtatgtgtgtatgtgtgtgtgtgaatgaaggaATGAATGAAATGAGAGAGACTGTCCATAACTGCTTATGGAGCGGCATTATATGTGCCCAGCGCAagtgaacgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtaagccTGAATGCTTTAATTGTAGTAGTAGCGGGTGCATACATGGTTAACGTGGGACGTGATTGTCTTTGTGAGCAGCAGAGTTTTTTGTGTTTCTCGtctgcacttttttattttatatcaactACGTTTTAGAATATTTCTCTCTTTTGACTTTTCATATCATTTTTATTGAGGGGGTTCAATCATttcttaaaaaagcattttaaagcagcatAGACAGCAGAGGACTGTACAAATGTAATGAATTTCCATATATTAAGGGTGTTAATGGTACACAAAAGTCATAGATAGGTTTATACTGTGGTTTGGAGCTCATGATTCATGAAGTAGAAAATTGTGGAAGTTAAGAGTTTGTTCCTTCTAGTGTGGTATCGTGCCCTCTTGAGGTGGTCAGTACAGCCTGTTAGCTAAGCTGTTAATTTTTGATGGgttttcacacacacatcctaTAACTGTGTAACAACACTGGCATTATTTCATAAAATTTGAGTCAGTATTTTTCA

Function

symbol description
rras Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within Notch signaling pathway and maintenance of epithelial cell apical/basal polarity. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in hindbrain and somite. Orthologous to human RRAS (RAS related).

NR:

description
PREDICTED: ras-related protein R-Ras isoform X1

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07829 RRAS; Ras-related protein R-Ras

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251062.3 True 1589 mRNA 0.44 7 15194863 15208007

Neighbor

gene id symbol gene type direction distance location
prrg2 NA coding downstream 12163 15174397 ~ 15182700 (-)
prr12 prr12,prr12b,LOC107729421,LOC107658420,LOC107689691,LOC107730729,LOC107554076 coding downstream 22431 15136544 ~ 15172432 (-)
LOC103041971 LOC103041971 coding downstream 79392 15113469 ~ 15115471 (-)
scaf1 scaf1,LOC107658492,LOC107583012,LOC106583916 coding downstream 82209 15099039 ~ 15112654 (-)
LOC103041664 LOC108427365 coding downstream 107650 15046467 ~ 15087213 (-)
LOC103047588 LOC107579758 coding upstream 11752 15219759 ~ 15225519 (-)
ap2a1 ap2a1,LOC103373570,LOC104937940,LOC103131521 coding upstream 20912 15228919 ~ 15269805 (-)
LOC103027827 syt5a,LOC108427381,LOC107658481,LOC107583026,LOC107730742,LOC107548337 coding upstream 440277 15648284 ~ 15665371 (-)
LOC103029400 LOC108427383,LOC108427382,LOC100528069,LOC108427385 coding upstream 463749 15671756 ~ 15673621 (-)
LOC103029096 LOC108427383,LOC108427382,LOC108427385,LOC100528069 coding upstream 473193 15681200 ~ 15683515 (-)
LOC111194139 NA non-coding downstream 105735 15087871 ~ 15089128 (-)
G10782 polr3d non-coding downstream 174748 15019291 ~ 15020115 (-)
G10654 NA non-coding downstream 423245 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 486250 14707333 ~ 14708613 (-)
G10595 NA non-coding downstream 499969 14692782 ~ 14694894 (-)
G10811 NA non-coding upstream 71446 15279453 ~ 15279928 (-)
G10962 NA non-coding upstream 460868 15668875 ~ 15689205 (-)
G10989 NA non-coding upstream 682066 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 735350 15943357 ~ 15943893 (-)
G11000 NA non-coding upstream 742927 15950934 ~ 15951171 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 213294 14960832 ~ 14981569 (-)
G10767 NA other downstream 270904 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 397220 14788070 ~ 14797643 (-)
hsd3b7 hsd3b7,LOC106601563 other downstream 538302 14619376 ~ 14656561 (-)
G10560 NA other downstream 951069 14241061 ~ 14243794 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 64748 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 77669 15285676 ~ 15286735 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 550749 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 771230 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 1113571 16321578 ~ 16353834 (-)

Expression


Co-expression Network