LOC103047588 (LOC107579758)


Basic Information

Item Value
gene id LOC103047588
gene name LOC107579758
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15219759 ~ 15225519 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251063.3
GAATCGGCATTACgtcatttttttctgcctcGCGCAGGTATAGGAGCtgcaaacaacaacaacagaagcagcagccgagagagagagagagcagcagcagctcttacACTTTCCTCACTTTCAACAAGGATTATCACCCGTTCCCTCGCGCTGCTCTGCACCGATATTCTCTGGACTCTGGGTTTATTTTTGCTTCGTTCTTGCAGCATTTTGATTGCATACATACACGTTTGCTTGgTCTGGTCAGCAGAACCACCGTGTAGAGATGGTTTTCTGCAGGGATGGTCAGCCTGAGCGAGCCCCGCTGTCCCGTATCCTGCCGCAGCTCTACCTCGGTGCAGAGATGGATGTAACGCAGGACTGTCTCTCTGCCCGGGGTATTTCCTATGTGCTAAGCGTTAGTCGCTGTTGCCCTCAGCCATCATTCCTGCCCCAGTCCCAGTACCTCCGGATCCCCATAGACGACTCTCTCCGGGACGACCTGCTGCCCTGGATCCCCCAGGCGCTGAGCTTTATTGATGGAGCCATGTCCCTGGGTTGCTCAGTCATCGTCCACTGTGCAGCGGGAATCTCACGGTCCCCAGCTCTTGCAGTGGCTTACGTTATGTACAGTCTGGGAATGGATCTGGATCATGCTTACAGGTATGTGAAAGAGCGCAGGCCTACGATTTCCCCAAACTTCAACTTCTTAGGTCAACTGCAGGTCTTCCAGGGAACACTTCCTCTGAAAAGCGGTAACACAAACCAGACCCCACATCACCTGCTCAGTTCTTCTGACACCAGCAAACCAGCCAATAGCAACTCCACTTCAGGTCTGTTCACCAATGAAAAAGTGCAGGACAACGTTACAGACAATGATAGCGTGGTCAGTGAGGACACCAAAGCAGATGTACACTGTGAAAACAAGAACAGCCACCAAAGGGAATGTGTTTTGACCCCAAACCCAAAGCCAGAGtttactctatctctctccaaTAAGCTCAAAACTCTAACTTTAGAGCCTGTAGAGGTGCAGAGGTCACCCTCGACTCTGCAGGATGCCCACACGCCGCTGCCACCAAAGCCCACCCACCTTCAAATCCCATCTCTCATAGAAAAGCGCAAGAGCCTCACTCTGTCGCTCACTCCAGTCTGTCCTAGTCCCCAGACTGTCCACCTGGAGGCAGCAGCAGTAAGCAACATTTCTAGCAGCAACGCTTCTGCTCAGTGCGAGGCATGCAGTGCCCCTGTTGACCAGAGGCAGGCACCAAGAGGAGGAGCAGGAAAAAGCAGAAAGCTTGATCTTACACTGAACAGCACCAACAGGTCCAACAGCAGAGAGGCTTCTTCAAGATGCAGCTCATCAGGGtcccagaaaaaaagagaaaagaatgagaaacgaagctcctcctcctcagtaAACAGGGCAAAAAAGCAGGAGCAGCCAAAAGCAAAGCCATCCCTgcagaaaggaaagagagactGTAGTAAGGCAACAACAGCAAAAAGACATGGGCAGGCCCAGAGCTCAGGCAGTACCACAGCTCACCAGCAGGAGGTGCCAGTTTGCGCAGTAGAAGCAGTGGAGGTTATTGATGCTGACCAAAGTCCCCTGTCACCCATCAACCTGACTATCAACCGACTCTTGGGGTGGGGGGAGCGCATGCTGCTCGGGGTCCTTCTTGGCCCCCATATCAAGGTGGGCCAGGCTGCTCTGCCTTACAGATGCTGAAGAAAGTCCGGCGGATGCTGAAGATTCGTTTGTGCACTTTAAGAAATGATGCACTCATATGTCATGTACAGTAAATTAATtctacattaataaaatatggcAGAATTACTGTAGACAGTTACTGTAGAAAATAAGTGAAGTGGAAAGATGTACAGTGATTTTGGTACCATGTTGAAATTTTACTGATTTTACAGGTTTGACTGATATTGATGATTGGtgatttattttatagtaaTCCAAAAGAGCAAAATGTCTAAAGACACTTATGCCTTGTATTCTAttcattttactgcattttaaaatCTAGAATAATAGACAAAATTGCAGTGTTATCCAAGGAAGTCCCAAAAATGtctatgttttttgtattattgtatttgtCAACCAAATTATATTGGATATTGCAAATATCGACATAACTCCACAATTCCTGTAACTGTGTGCATCCATACTAAAcacagatcagccataacattaatgcCACTGACAAGTAAAGTGACTATATATGAATAACGCTGATCATCTGCAAGTTAATCTGCAGTCAGTTCTTAAAGCACAAGGATCTTCcgaggtcttgtggagtccaGGCTTTGACGGGTTAGAGCTGTTTTGGTTGGGCAAGTATGGTTGGTATAACAACaatattacttttaatattacatattaattttaatggttTTACTGTCATGGCTGTTTGGTGTACATTGTATTAATATGGAAATAATGCACACAGTTGCAACAAGTCAGTTCAGTGCATCACTTTTTTCAGTGCACAAACCCACTACACAGCATCAAGTTTATTTTGGTCCTCAAATGGACAAGAAAACTCTTTGACGAAGGagaaaaaggaaatgaaaatCAAGGGAGATGGTGTGAATAGATGTATGAGTGTGtacagttgtgtgtgtttttgtgtgagaGACTTTTACTTATTTGACCAGACTGCATGTTGGGCCTATATATAAAACGGTttgtgtgacaaacatgtacaCTTGATCTGACGCTCTGTCATAAATCGCCTATTTGCTGTCGATTATTCTACAAATGCACTGAATGTGTGTAAATGGCTGAAGAAGACTTTGCTATATGTCTGTTCTATTTTATTGCACAGCCCGCCTGTGAATTGATTATTTATTGAActgattattgttgttatttataaatcaatattttcaggTTGACTGGCTATTTTAGCACTACGGCTTGTACTGAGACACAGTGTTCATTAAAGAcgacatattttacattta

Function

NR:

description
PREDICTED: dual specificity protein phosphatase 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251063.3 True 2961 mRNA 0.45 5 15219759 15225519

Neighbor

gene id symbol gene type direction distance location
rras rras,LOC107730736,LOC107658490,LOC107583016,LOC107554112 coding downstream 11752 15194863 ~ 15208007 (-)
prrg2 NA coding downstream 37059 15174397 ~ 15182700 (-)
prr12 prr12,prr12b,LOC107729421,LOC107658420,LOC107689691,LOC107730729,LOC107554076 coding downstream 47327 15136544 ~ 15172432 (-)
LOC103041971 LOC103041971 coding downstream 104288 15113469 ~ 15115471 (-)
scaf1 scaf1,LOC107658492,LOC107583012,LOC106583916 coding downstream 107105 15099039 ~ 15112654 (-)
ap2a1 ap2a1,LOC103373570,LOC104937940,LOC103131521 coding upstream 3400 15228919 ~ 15269805 (-)
LOC103027827 syt5a,LOC108427381,LOC107658481,LOC107583026,LOC107730742,LOC107548337 coding upstream 422765 15648284 ~ 15665371 (-)
LOC103029400 LOC108427383,LOC108427382,LOC100528069,LOC108427385 coding upstream 446237 15671756 ~ 15673621 (-)
LOC103029096 LOC108427383,LOC108427382,LOC108427385,LOC100528069 coding upstream 455681 15681200 ~ 15683515 (-)
LOC103044149 LOC108427384,LOC108427383,LOC100528069,LOC108427382 coding upstream 474975 15700494 ~ 15705807 (-)
LOC111194139 NA non-coding downstream 130631 15087871 ~ 15089128 (-)
G10782 polr3d non-coding downstream 199644 15019291 ~ 15020115 (-)
G10654 NA non-coding downstream 448141 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 511146 14707333 ~ 14708613 (-)
G10595 NA non-coding downstream 524865 14692782 ~ 14694894 (-)
G10811 NA non-coding upstream 53934 15279453 ~ 15279928 (-)
G10962 NA non-coding upstream 443356 15668875 ~ 15689205 (-)
G10989 NA non-coding upstream 664554 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 717838 15943357 ~ 15943893 (-)
G11000 NA non-coding upstream 725415 15950934 ~ 15951171 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 238190 14960832 ~ 14981569 (-)
G10767 NA other downstream 295800 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 422116 14788070 ~ 14797643 (-)
hsd3b7 hsd3b7,LOC106601563 other downstream 563198 14619376 ~ 14656561 (-)
G10560 NA other downstream 975965 14241061 ~ 14243794 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 47236 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 60157 15285676 ~ 15286735 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 533237 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 753718 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 1096059 16321578 ~ 16353834 (-)

Expression


Co-expression Network