LOC103027827 (syt5a,LOC108427381,LOC107658481,LOC107583026,LOC107730742,LOC107548337)


Basic Information

Item Value
gene id LOC103027827
gene name syt5a,LOC108427381,LOC107658481,LOC107583026,LOC107730742,LOC107548337
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15648284 ~ 15665371 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251086.3
CGCATGAGTGCAAGCTGCGCTCAAAAAAATCCTCTCCTACCAAACTGGAGGTGTCCAGTTTCCATCtataaaagagaggaaaagtgaTAGATCTCCATCCTCAGtgtttctgtagCTGATCAGCCATGCTACTGGTCAGCCTACAGCAGCGTGTGCGGCGGGCGGCGGAGCCAGAGGCTGAACCTGCCCCGGCTCCGCCCCCTCCACCTTCTCACCACTCCCACAACTTCATGAACATGAAGAACAAGTTCTTTAATGAGCTCGGCCACTTACCCAACCCCAAGATCAAGTtgCCCATGTGGGCAATTGGGGCCATTGTGGTGGTGGTCCTGGCCCTGGTGGGCTGCTTGGCCTTCTGCATCTATAAGAAGTGTTTAGGAGGGAAGAAGAAAGCAAAGAAAGTGCGGGAGAGAAAGGGCGGACGCCGGCGGAGGAAAAAGGAGGGCGAGGGAGAGGATGGAGCGGAGGAGGCGAAGCAAGAAGAGGGTGAGGAAAAAGAGCAGGAATTATTTGGTAAACTGGAGTACTCTCTGGACTACAACTTCACAGACAATcagCTCATCGTTGGTATCCTACAAGCTCAGGACCTGCCTGCTATGGATATAGGTGGAACCTCTGACCCCTATGTGAAAGTGTACATGCTTCCTGACAAGAAGAAGAAATTTGAGACAAAAGTCCAGCGCAAGAACCTGTGTCCCGTTTTTAACGAGACATTCATTTTCAAGATCCCCTTCAATGACCTGGCTGGACAGACTTTGGTCTTGCAGGTGTTCGACTTTGACCGCTTTGGCAAGCATGATGTGATCGGTGAGATCAAAATAGCCATGAACAGTATTGACCTGGGACAGCCTATCCATGAGTGGAAAGACCTGGTgggaggagaaaaagaagagCAAGAGAAGTTGGGTGACATCTGCATCTCCTTACGATACGTTCCCACCTCTGGCAAGCTCACAGTTTGTATAATGGAGGCCAAGAACCTGAAGAAGATGGACGTGGGTGGTTTATCAGatccATTTGTAAAGGTGGTTCTCCAACACAACGGGAAACgtttgaagaagaagaagacgacaGTTAAACAGAACACACTGAACCCGTACTTCAATGAAAGCTTTAGCTTTGAAATCCCCTTCGCTCAGATACAGAAGATCCAGGTGTTGATCACAGTCTATGACTACGATAAGCTGGGCAGTAATGATGCTATTGGAAAATGCTGGATTGGCTATGGAGCCAGTGGAGTGGGTCTACGCCACTGGTCAGACATGCTGGCCAACCCCAGGCGTCCTGTGGCCCAGTGGCACACACTCCAGCCAGAGGAGGAAGTGGATGCAGCCCTGAAGGCTCCTATccgctaa
>XM_007251087.3
CGCATGAGTGCAAGCTGCGCTCAAAAAAATCCTCTCCTACCAAACTGGAGGTGTCCAGTTTCCATCtataaaagagaggaaaagtgaTAGATCTCCATCCTCAGtgtttctgtagCTGATCAGCCATGCTACTGGTCAGCCTACAGCAGCGTGTGCGGCGGGCGGCGGAGCCAGAGGCTGAACCTGCCCCGGCTCCGCCCCCTCCACCTTCTCACCACTCCCACAACTTCATGAACATGAAGAACAAGTTCTTTAATGAGCTCGGCCACTTACCCAtgCCCATGTGGGCAATTGGGGCCATTGTGGTGGTGGTCCTGGCCCTGGTGGGCTGCTTGGCCTTCTGCATCTATAAGAAGTGTTTAGGAGGGAAGAAGAAAGCAAAGAAAGTGCGGGAGAGAAAGGGCGGACGCCGGCGGAGGAAAAAGGAGGGCGAGGGAGAGGATGGAGCGGAGGAGGCGAAGCAAGAAGAGGGTGAGGAAAAAGAGCAGGAATTATTTGGTAAACTGGAGTACTCTCTGGACTACAACTTCACAGACAATcagCTCATCGTTGGTATCCTACAAGCTCAGGACCTGCCTGCTATGGATATAGGTGGAACCTCTGACCCCTATGTGAAAGTGTACATGCTTCCTGACAAGAAGAAGAAATTTGAGACAAAAGTCCAGCGCAAGAACCTGTGTCCCGTTTTTAACGAGACATTCATTTTCAAGATCCCCTTCAATGACCTGGCTGGACAGACTTTGGTCTTGCAGGTGTTCGACTTTGACCGCTTTGGCAAGCATGATGTGATCGGTGAGATCAAAATAGCCATGAACAGTATTGACCTGGGACAGCCTATCCATGAGTGGAAAGACCTGGTgggaggagaaaaagaagagCAAGAGAAGTTGGGTGACATCTGCATCTCCTTACGATACGTTCCCACCTCTGGCAAGCTCACAGTTTGTATAATGGAGGCCAAGAACCTGAAGAAGATGGACGTGGGTGGTTTATCAGatccATTTGTAAAGGTGGTTCTCCAACACAACGGGAAACgtttgaagaagaagaagacgacaGTTAAACAGAACACACTGAACCCGTACTTCAATGAAAGCTTTAGCTTTGAAATCCCCTTCGCTCAGATACAGAAGATCCAGGTGTTGATCACAGTCTATGACTACGATAAGCTGGGCAGTAATGATGCTATTGGAAAATGCTGGATTGGCTATGGAGCCAGTGGAGTGGGTCTACGCCACTGGTCAGACATGCTGGCCAACCCCAGGCGTCCTGTGGCCCAGTGGCACACACTCCAGCCAGAGGAGGAAGTGGATGCAGCCCTGAAGGCTCCTATccgctaaacacacacagaacacacaccacTTCTCCCTTTAAttgaatagaataaaaacaataaaaccctgctgaaaatccagctcaagaccagcttttgctggtagctggttttagatggtctaagctggtctttgatggtctAGCTGGCTATCTAATTGAAGCTAGGCTAGATAAGCTGGTTGTCAAATACCATagttatgctggtcaaccagcatggtcataGTGACCAACCTttttggtcttgctggtcaaccagcattgtcattattaggggtgggaatcaatGGGCCTGTGATGCGAAATTATCACGATACATTTCCCGCAATAACAATGACATTACAACACTGTGAATCTGCGATACTCTATATATTGCAAGACAATACTCTacaacaggggtcggcaatgGGTGGCCCGCGGGCTACATTCCTACCCGGTCACTCTGTCACGTTCATCGTGGAGAAATTTAGTTAGTGAAATTGGCCACCAACTTTGGGGGCACGTATCGATATTGATATTCGACGACGCATATCGCTAATGTAACTCAAATAAAAgcgatacaatatattgtgatgttaATATTTAGTCCCATCCCTAATCAATACAGTCAACCAGTTTGGTCGTACATGTCATGAGGACAGGCTGGTCAACAGCATATATAtaatggtcatgctggttaacCAATTTGGTCAagatggtcatgctggttacaCTAGTCAGCTATCTTAGTCATGCTGGTGAACCAATATGGTCATGAAGAGTCATGCCAGTTAAAGACTTACTGGTCAACCATTTTGGTTAATTATCAAGGGTGGGAATGATAGGGCTCACAACAATaagatattatcacaataattgATATACTGCAAGACAATTTTCATCAAACTCATATAAAATCATACCTGTTGTTGATAAGCTAAGCTGCTCAACCAGCTGAACCATCTTGATCAGATTAAGCTGGCCAAGCATTTTTTTCTCCTGCAAGTACTTTAATATGTTCATGCAAAACAACACTTTTCAGAAGAATACAGTTAGAGAGTGTACACTTACACACGTCACTTAAAACACTACATAAACCTTAGAATCATTACTAACCTCACCATTCAAATAGATATGTACGATAATACCTAGCCTACCtgctaaacacacacctgaggACCTAGCAATTGGGTTTACATACCTGTCCAGAGATGTGTTTATCCCAGCAGAATCTCAATTTTATCCTCAGGTGAACTCACGGTGCAATCGCGCAAACCCCCACTTTACACCCGAGTCCCTTTATTAAAGATGTTCCTGCCGGTGTTTCTTTCACATCCCGCTGAGTGTAACCATGACCTGTTCTGTCTGCTGTagaaaacacacacccacaagccatccacacacacagggaacaaTTTAATCTAATTCATCACATTTTCATGATGTTATTCTTGGAGCATTTTTTGCTTGTGTATGTTCGTAAGTGCATGAGaggtatgtatatgtgtgtgtatttgttgtaTATGAGTGAATGGAAAGAGTATATGTGTTTTTGTctataaatatattgtgttgAAATGTATTGAAAGAGTATAACCCTGTTTTCCATCCTTGTTCTGCACTGTGAAATACTGACTGTAAATACAACGAGAGGATACAATCTAAA
>XM_022677333.1
ATGCTACTGGTCAGCCTACAGCAGCGTGTGCGGCGGGCGGCGGAGCCAGAGGCTGAACCTGCCCCGGCTCCGCCCCCTCCACCTTCTCACCACTCCCACAACTTCATGAACATGAAGAACAAGTTCTTTAATGAGCTCGGCCACTTACCCAACCCCAAGATCAAGTtgCCCATGTGGGCAATTGGGGCCATTGTGGTGGTGGTCCTGGCCCTGGTGGGCTGCTTGGCCTTCTGCATCTATAAGAAGTGTTTAGGAGGGAAGAAGAAAGCAAAGAAAGTGCGGGAGAGAAAGGGCGGACGCCGGCGGAGGAAAAAGGAGGGCGAGGGAGAGGATGGAGCGGAGGAGGCGAAGCAAGAAGAGGGTGAGGAAAAAGAGCAGGAATTATTTGGTAAACTGGAGTACTCTCTGGACTACAACTTCACAGACAATcagCTCATCGTTGGTATCCTACAAGCTCAGGACCTGCCTGCTATGGATATAGGTGGAACCTCTGACCCCTATGTGAAAGTGTACATGCTTCCTGACAAGAAGAAGAAATTTGAGACAAAAGTCCAGCGCAAGAACCTGTGTCCCGTTTTTAACGAGACATTCATTTTCAAGATCCCCTTCAATGACCTGGCTGGACAGACTTTGGTCTTGCAGGTGTTCGACTTTGACCGCTTTGGCAAGCATGATGTGATCGGTGAGATCAAAATAGCCATGAACAGTATTGACCTGGGACAGCCTATCCATGAGTGGAAAGACCTGGTgggaggagaaaaagaagagCAAGAGAAGTTGGGTGACATCTGCATCTCCTTACGATACGTTCCCACCTCTGGCAAGCTCACAGTTTGTATAATGGAGGCCAAGAACCTGAAGAAGATGGACGTGGGTGGTTTATCAGatccATTTGTAAAGGTGGTTCTCCAACACAACGGGAAACgtttgaagaagaagaagacgacaGTTAAACAGAACACACTGAACCCGTACTTCAATGAAAGCTTTAGCTTTGAAATCCCCTTCGCTCAGATACAGAAGATCCAGGTGTTGATCACAGTCTATGACTACGATAAGCTGGGCAGTAATGATGCTATTGGAAAATGCTGGATTGGCTATGGAGCCAGTGGAGTGGGTCTACGCCACTGGTCAGACATGCTGGCCAACCCCAGGCGTCCTGTGGCCCAGTGGCACACACTCCAGCCAGAGGAGGAAGTGGATGCAGCCCTGAAGGCTCCTATccgctaaacacacacagaacacacaccacTTCTCCCTTTAAttgaatagaataaaaacaataaaaccctgctgaaaatccagctcaagaccagcttttgctggtagctggttttagatggtctaagctggtctttgatggtctAGCTGGCTATCTAATTGAAGCTAGGCTAGATAAGCTGGTTGTCAAATACCATagttatgctggtcaaccagcatggtcataGTGACCAACCTttttggtcttgctggtcaaccagcattgtcattattaggggtgggaatcaatGGGCCTGTGATGCGAAATTATCACGATACATTTCCCGCAATAACAATGACATTACAACACTGTGAATCTGCGATACTCTATATATTGCAAGACAATACTCTacaacaggggtcggcaatgGGTGGCCCGCGGGCTACATTCCTACCCGGTCACTCTGTCACGTTCATCGTGGAGAAATTTAGTTAGTGAAATTGGCCACCAACTTTGGGGGCACGTATCGATATTGATATTCGACGACGCATATCGCTAATGTAACTCAAATAAAAgcgatacaatatattgtgatgttaATATTTAGTCCCATCCCTAATCAATACAGTCAACCAGTTTGGTCGTACATGTCATGAGGACAGGCTGGTCAACAGCATATATAtaatggtcatgctggttaacCAATTTGGTCAagatggtcatgctggttacaCTAGTCAGCTATCTTAGTCATGCTGGTGAACCAATATGGTCATGAAGAGTCATGCCAGTTAAAGACTTACTGGTCAACCATTTTGGTTAATTATCAAGGGTGGGAATGATAGGGCTCACAACAATaagatattatcacaataattgATATACTGCAAGACAATTTTCATCAAACTCATATAAAATCATACCTGTTGTTGATAAGCTAAGCTGCTCAACCAGCTGAACCATCTTGATCAGATTAAGCTGGCCAAGCATTTTTTTCTCCTGCAAGTACTTTAATATGTTCATGCAAAACAACACTTTTCAGAAGAATACAGTTAGAGAGTGTACACTTACACACGTCACTTAAAACACTACATAAACCTTAGAATCATTACTAACCTCACCATTCAAATAGATATGTACGATAATACCTAGCCTACCtgctaaacacacacctgaggACCTAGCAATTGGGTTTACATACCTGTCCAGAGATGTGTTTATCCCAGCAGAATCTCAATTTTATCCTCAGGTGAACTCACGGTGCAATCGCGCAAACCCCCACTTTACACCCGAGTCCCTTTATTAAAGATGTTCCTGCCGGTGTTTCTTTCACATCCCGCTGAGTGTAACCATGACCTGTTCTGTCTGCTGTagaaaacacacacccacaagccatccacacacacagggaacaaTTTAATCTAATTCATCACATTTTCATGATGTTATTCTTGGAGCATTTTTTGCTTGTGTATGTTCGTAAGTGCATGAGaggtatgtatatgtgtgtgtatttgttgtaTATGAGTGAATGGAAAGAGTATATGTGTTTTTGTctataaatatattgtgttgAAATGTATTGAAAGAGTATAACCCTGTTTTCCATCCTTGTTCTGCACTGTGAAATACTGACTGTAAATACAACGAGAGGATACAATCTAAA

Function

symbol description
syt5a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Is expressed in epiphysis; midbrain; and retina. Orthologous to human SYT5 (synaptotagmin 5).

NR:

description
PREDICTED: synaptotagmin-2-like isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251086.3 False 1355 mRNA 0.50 10 15649921 15665371
XM_007251087.3 True 2977 mRNA 0.44 9 15648284 15665371
XM_022677333.1 False 2867 mRNA 0.44 9 15648284 15658624

Neighbor

gene id symbol gene type direction distance location
ap2a1 ap2a1,LOC103373570,LOC104937940,LOC103131521 coding downstream 378479 15228919 ~ 15269805 (-)
LOC103047588 LOC107579758 coding downstream 422765 15219759 ~ 15225519 (-)
rras rras,LOC107730736,LOC107658490,LOC107583016,LOC107554112 coding downstream 440277 15194863 ~ 15208007 (-)
prrg2 NA coding downstream 465584 15174397 ~ 15182700 (-)
prr12 prr12,prr12b,LOC107729421,LOC107658420,LOC107689691,LOC107730729,LOC107554076 coding downstream 475852 15136544 ~ 15172432 (-)
LOC103029400 LOC108427383,LOC108427382,LOC100528069,LOC108427385 coding upstream 6385 15671756 ~ 15673621 (-)
LOC103029096 LOC108427383,LOC108427382,LOC108427385,LOC100528069 coding upstream 15829 15681200 ~ 15683515 (-)
LOC103044149 LOC108427384,LOC108427383,LOC100528069,LOC108427382 coding upstream 35123 15700494 ~ 15705807 (-)
LOC103038450 LOC108427385,LOC100528069,LOC108427383,LOC108427382 coding upstream 46444 15711815 ~ 15713440 (-)
aldh16a1 aldh16a1 coding upstream 57614 15722985 ~ 15738813 (-)
G10811 NA non-coding downstream 368356 15279453 ~ 15279928 (-)
LOC111194139 NA non-coding downstream 559156 15087871 ~ 15089128 (-)
G10782 polr3d non-coding downstream 628169 15019291 ~ 15020115 (-)
G10654 NA non-coding downstream 876666 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 939671 14707333 ~ 14708613 (-)
G10962 NA non-coding upstream 3504 15668875 ~ 15689205 (-)
G10989 NA non-coding upstream 224702 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 277986 15943357 ~ 15943893 (-)
G11000 NA non-coding upstream 285563 15950934 ~ 15951171 (-)
G11008 NA non-coding upstream 341564 16006935 ~ 16007794 (-)
LOC111188178 NA other downstream 361549 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 369847 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 666715 14960832 ~ 14981569 (-)
G10767 NA other downstream 724325 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 850641 14788070 ~ 14797643 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 93385 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 313866 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 656207 16321578 ~ 16353834 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 3443342 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 3576385 19241756 ~ 19273854 (-)

Expression


Co-expression Network