LOC103029096 (LOC108427383,LOC108427382,LOC108427385,LOC100528069)


Basic Information

Item Value
gene id LOC103029096
gene name LOC108427383,LOC108427382,LOC108427385,LOC100528069
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15681200 ~ 15683515 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251090.3
CTCTCACAGCTTCAGGAAGATTCCGCAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCTTCCTCCCTCCtgcactatttattatacaagaGTTTATTTTTCTACAGCCTTTttgataagaaaataaaaaaatcagccGAAATGACTTCTCAGATCCGCCAGAACTACCACAGCGACTGCGAGGCCGCCATCAACAGGATGGTCAACATGGAGTTCTACGCCTCTTACACCTACACCTCCATGGCTTACTACTTCTCTCGGGATGATGTAGCCCTCGAAGGGTTCGCTCATTTCTTCAAGGAGAACAGCCATGAGGAGCGTGAGCATGCAGAGAAGTTTCTGGAATTCCAGAACAAGAGAGGTGGACGTGTCTTCCTCCAGGATATCAAGAAACCTGAGCGTGATGAGTGGGGAACTGGACTGGAGGCCATGCAGTGTGCTCTGCAGCTGGAGAAGAAAGTTAACCAGGCTCTGCTGGACCTGCACAAGATCGCCTCAGAGAAGGGTGACCCTCATCTGTGTGACTTCCTGGAGTCCAACTACCTGAACGAGCAGGTGGAGATGATCAAGAAGCTGGGTGACCACATCACCAACCTCACCAAGATGGACGCCGGCAACAACAGGATGGCAGAGTACCTGTTCGACAAGCACACCCTGGGCAGCAAGAGCTAAACCCAGCTCCAGACTTCATCAGATCCACATACTTTGCGCTTGAAGTCTGAAATCATCTAAGATAAACTGCAGGATTGAGTTGTGGAGTAGCTCCATCTTTTATTTTGCATTCTCTGTTCTTTCAGCAAGGTGATGGTGGATGTCTATAACACTAAATTGTAACTGAATCTGATGAAtaaacattttgaactgaaa

Function

NR:

description
PREDICTED: ferritin, middle subunit-like

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K00522 FTH1; ferritin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251090.3 True 871 mRNA 0.47 4 15681200 15683515

Neighbor

gene id symbol gene type direction distance location
LOC103029400 LOC108427383,LOC108427382,LOC100528069,LOC108427385 coding downstream 7579 15671756 ~ 15673621 (-)
LOC103027827 syt5a,LOC108427381,LOC107658481,LOC107583026,LOC107730742,LOC107548337 coding downstream 15829 15648284 ~ 15665371 (-)
ap2a1 ap2a1,LOC103373570,LOC104937940,LOC103131521 coding downstream 411395 15228919 ~ 15269805 (-)
LOC103047588 LOC107579758 coding downstream 455681 15219759 ~ 15225519 (-)
rras rras,LOC107730736,LOC107658490,LOC107583016,LOC107554112 coding downstream 473193 15194863 ~ 15208007 (-)
LOC103044149 LOC108427384,LOC108427383,LOC100528069,LOC108427382 coding upstream 16979 15700494 ~ 15705807 (-)
LOC103038450 LOC108427385,LOC100528069,LOC108427383,LOC108427382 coding upstream 28300 15711815 ~ 15713440 (-)
aldh16a1 aldh16a1 coding upstream 39470 15722985 ~ 15738813 (-)
LOC103031937 NA coding upstream 226876 15910391 ~ 15928693 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding upstream 253007 15936522 ~ 15942544 (-)
G10811 NA non-coding downstream 401272 15279453 ~ 15279928 (-)
LOC111194139 NA non-coding downstream 592072 15087871 ~ 15089128 (-)
G10782 polr3d non-coding downstream 661085 15019291 ~ 15020115 (-)
G10654 NA non-coding downstream 909582 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 972587 14707333 ~ 14708613 (-)
G10989 NA non-coding upstream 206558 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 259842 15943357 ~ 15943893 (-)
G11000 NA non-coding upstream 267419 15950934 ~ 15951171 (-)
G11008 NA non-coding upstream 323420 16006935 ~ 16007794 (-)
G11013 NA non-coding upstream 336113 16019628 ~ 16020852 (-)
LOC111188178 NA other downstream 394465 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 402763 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 699631 14960832 ~ 14981569 (-)
G10767 NA other downstream 757241 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 883557 14788070 ~ 14797643 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 75241 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 295722 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 638063 16321578 ~ 16353834 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 3425198 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 3558241 19241756 ~ 19273854 (-)

Expression


Co-expression Network