LOC103036671 (LOC108427400)


Basic Information

Item Value
gene id LOC103036671
gene name LOC108427400
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16321578 ~ 16353834 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251116.3
gagagagagagagagagagagagagttagagagaggtGAGGGGCATGTTCAGAGCAGTGAGGGGAGCATTAGTGCGTGAGAATACTACAAGGGAGTGAAAGACAGAAGGGAAAGACAGAAgaggagaaatagagagaaagaaagagagaacagacGCAAGTGTGGAAGTTTGATAAGCAGTGGGGGAAATGTGTTAgagggttagtgtgtgtgtgtgtgtgtgtgtatccggTGTGGAAGGCTATGACTGCTTGTGAAGGACAGAAGCGATATGTGTCTACTCTCAGGATCCAGCTGTCAGCTCCAACATCTGGAGGAGTCAAATGCTCAAACACCTCCACTACCAGCAGCACCGGCAGCACCTCCAAGATCACAGAGAGACCAGCACTCTACCccgTGGATGAGGTGGATAAAGGTGCCGTTCCTGTCTTCCTCGAGCCCCTTCAGGACAGCATTGTGGAtgaaggaagtgacatcacactaAGGGGCGTCATTACAgggaaacagccaatcagagtaTCCTGGTTTCATAATGgtgAGGTAATGATGTTTGGTGAGAGCTCATTGGTTAGAGGAGAGGCAACGCTGGTTATAAAGGAATGTCTGCCGGAAGATGCCGGAGCGTACACCTGTGTAGCGGAAAACACTGCAGGGAAAACTTCCAGCAGCTCAGCCGTGTGTGTCAAagAAACGGCTGGTCGGCGCAATCATTCGCACTCGTCTCGAGATCCTGCTCCTGGACTGAAAAACGGCGTCGTGAAATCACCTCAGACTGTTCTGGATGACCGAAGTGTTTTCAGAGGACCAGATTCTCCTCAAACACCAAGTCCTCAAACACAGAGTCCCACTCACAGAAAAGAGGTGACAGGAAAGAGGAGAAGCAGCTCAGGGACAGTTATCCCGCTGCAGGTGATCTCCCCTCGTGATCAAGTGAAGGTTCGGCTTGGGGAGGGTGTGCGTCTGAGTTGTGAGTTTAAAGGCAGCTATCCAGTCGTGTCCTGTTGGATCCGCAACGGAAAAGAGGTGTTGGATGGTGGTAGGTACTCTATAGTGAGCAGTAGTGACAGGAGCACTCTTGTTATTTCGGACGCTCAGCCTGAGGACTCTGGACGATACACTCTAGTCGTACGAGATCGCAATAGCTCCACCCAGCATACGCTTACCTTGTCTGTCATTGAGCGCCCCCAGCCCCCTGCATCGTGCCCGGTGGTGTGTGTTCTCTCTGAGGACTCGGTGGTCCTCTCCTGGTCCGGCCCGTGTTACGACGGCGGTTCGGCCGTCACCGGATATGTGGTTGAGGTTCAGTCTGTAGACTCTGGTCACAGTGGTCTCTGGACCGAGCTTTCAGCCCACTGTAGAAGCACATCTCTGAGAGTAAGCACCGGACTCCAGCCTCAGGGACAGTACCGCTTTAGAGTGAGAGCCTGTAACACTGTGGGGGTCAGCGAACCCAGCCAGGAGTCTCCAGTGATAAAGATGGACAGCTCAGGAGAACATCATGAAGAGAAGATAAATGATTTTGTCTCCGTTACCATTGATGATTCACACAAAGTGACTGACCACTACAATGTACTGGAGAAACTAGGAGTaggaAAGTTTGGTCAGGTGTTCCGGCTGACCCATAAGGAGACGGGCCGTGTGTGTGCCGGGAAGTTCTACAAGGGTCGCCGGGCGAAGGAGAGAGATGCGGCCAAGAAAGAGATAGAACTGATGAACTTCCTCCACCACCCTAAACTGGTGCAGTGCCTGGCAGCTTACGACAACAAGCCTGAAATAGTGATGGTCATGGAGTTtaTTGCAGGTGGGGAGCTGTTTGAGCGCATTGTGGATGATAATTATGAGCACACAGAACCGTCAAGTGTGGGCTACATGCGTCAGATCGTGCAGGGGATCCAGTACATGCACCAGCAGAACATCGTCCACCTAGACCTCAAACCCGAGAacattgtgtgtgtggacaGAACCGGCATTCAGATAAAAATCATCGACTTCGGGCTCGCTGCCAAgctggATCCCTCAAACCCAGTGAAGGTGATGCACGGCACCCCTGAGTTTGTGGCTCCAGAAGTCATCAACTATGAACCCATCTGCCTGGCGACAGATATGTGGAGCATTGGAGTGATCTGTTACatactGTTGAGTGGTGAGTCTCCGTTCCTCGGGGACAGTGATTCAGAAACCCTGGCTCTAGTGACCGCAGCTCAGTGGGAGTTTGATGAGGAAAGCTTCGAGGACATCACTGACCAGGCCAAAGATTTCATCAGCTCTCTACTGCACAAAGATGTCAGACGTCGGTTGTCATGTGAAGAAGCTCTGTCCCACTCCTGGATGGTGGCGTTTGAGTCTGCGAATCCCAGTTCTGCCAAAAACCTTTCCAAAGACAAGATGAAGAAGTTCTTAGCCAGGCAGAAGTGGAAGaaaacagGCAAAGCCGTGCTGGCTCTGAAGAGGATGGCCTTACTGTCTAAAGCCGATAGTTCAGCTTCTCTCCCCAGCCCTGTGGACGAAACAGAACAGGCTCTAAAGTCTTTAGAAAAGAAGATGCAGTCCAAGCCTGAGTTCACGAAGACACCAATAGATCTTTCTGTCTTTGAGGAGTCCACTGCCGAGTTCTTCTGCCATGTTACTGGCTATCCAGACCCTGAGGTGGTGTGGCTGAAGGATGGAGAggtgctggaggaggaggagggaagtGTACAGGTGGAGTATGAGGAGGGTGGAACCTGCACCCTGATCCTGGAGAACGTTTCTCTGGAGCAGAATGGGACCTACTCCTGCAGAGCCACCAACATCCACGGGGAGGCGCTGTGCTCTGCCAAACTCACTGTGGTGGATCAGGAAGAAGACACAGACTGATGATAAATGTCTTAAACACTTCAAGATTTAGATATAGAAGATATAgattaagatattaagatatatatatattttgatatgtatgcacatttttctttttctctcttattgTAACTGTTAACCTGTCACTCACGTTCATGGTCCATGTCTctctttttacttaaaatatgtaCCAGGTTACTCTCCTGTAGTTACATAATACGTATATATCACCACATTTAAGTGCTCTTAAGCATCATGTAACAGCACtttttacaagttttagtaaaaaaaaatctcttgcTGTCTGCTGAAAAGACCCGaaacatattacatacatatagctaaaaaaaaaatagagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaatatggataaacacaaggcatcaaaccaagctgaactgcttgaatttttgcaccaggagtggcataaagttatccaaaggcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaactgtgatttaaaaccagggttattccaccaaatattgatttctggacttattgaatattaacttgttctttgcactatttaaggtctgaaagctcttttcagccatttgtcattttctccaaataaatgctctaaatgacaatatttttacttagaatttggaagaaatgttgtctgtagtttatagaaaaaaacaatgctcatttcactcaaacatatacctttaaatagcataATCTTGAGAATTGAGAAACTGGTTAAGGAACTggaatggtctcttaattttttccagggctgtatatttCCAGAATTTTCCTGTAACACCAAGAAATCCAACAGTGCAGACAAAGCTTCTGGCCTCAGTGTGATTGATGGATTCTAGGTTTAAACAGAGAGTCAAGACAAACTCTTCAGACTTAGGACCTCAGAGAGAAGTTTATTTGTATACAAATTAAGTGTCTTTGTTGTTCAGAGAAGATTTTTGAATAGAAATTGGAGCCCAAGGCAAGAGCATTAGTAAAGTCAGAATATTGGATGGtgaccaccccacctcatccttaACTGTTCATTTTTATCTCAAAAGTATTttatggagcaccatcattccagagaacattcaacagctcagtgctgggtcGTTTATACCCCACTAGCCCCTGTCTGGCTAGTGTGGCTTGTCATTTTGCCAATAagggagtcctattctattggcagtacttgtCTACAGGCACTAGGCAAGATATGCTTGttgcatattttatttcattttacctGACTTTTGAATAAACTCGAAATATTTAATGAG
>XR_454920.3
agagagagagagagagagagagagagagttagagagaggtGAGGGGCATGTTCAGAGCAGTGAGGGGAGCATTAGTGCGTGAGAATACTACAAGGGAGTGAAAGACAGAAGGGAAAGACAGAAgaggagaaatagagagaaagaaagagagaacagacGCAAGTGTGGAAGTTTGATAAGCAGTGGGGGAAATGTGTTAgagggttagtgtgtgtgtgtgtgtgtgtgtatccggTGTGGAAGGCTATGACTGCTTGTGAAGGACAGAAGCGATATGTGTCTACTCTCAGGATCCAGCTGTCAGCTCCAACATCTGGAGGAGTCAAATGCTCAAACACCTCCACTACCAGCAGCACCGGCAGCACCTCCAAGATCACAGAGAGACCAGCACTCTACCccgTGGATGAGGTGGATAAAGGTGCCGTTCCTGTCTTCCTCGAGCCCCTTCAGGACAGCATTGTGGAtgaaggaagtgacatcacactaAGGGGCGTCATTACAgggaaacagccaatcagagtaTCCTGGTTTCATAATGgtgAGGTAATGATGTTTGGTGAGAGCTCATTGGTTAGAGGAGAGGCAACGCTGGTTATAAAGGAATGTCTGCCGGAAGATGCCGGAGCGTACACCTGTGTAGCGGAAAACACTGCAGGGAAAACTTCCAGCAGCTCAGCCGTGTGTGTCAAagAAACGGCTGGTCGGCGCAATCATTCGCACTCGTCTCGAGATCCTGCTCCTGGACTGAAAAACGGCGTCGTGAAATCACCTCAGACTGTTCTGGATGACCGAAGTGTTTTCAGAGGACCAGATTCTCCTCAAACACCAAGTCCTCAAACACAGAGTCCCACTCACAGAAAAGAGGTGACAGGAAAGAGGAGAAGCAGCTCAGGGACAGTTATCCCGCTGCAGGTGATCTCCCCTCGTGATCAAGTGAAGGTTCGGCTTGGGGAGGGTGTGCGTCTGAGTTGTGAGTTTAAAGGCAGCTATCCAGTCGTGTCCTGTTGGATCCGCAACGGAAAAGAGGTGTTGGATGGTGGTAGGTACTCTATAGTGAGCAGTAGTGACAGGAGCACTCTTGTTATTTCGGACGCTCAGCCTGAGGACTCTGGACGATACACTCTAGTCGTACGAGATCGCAATAGCTCCACCCAGCATACGCTTACCTTGTCTGTCATTGAGCGCCCCCAGCCCCCTGCATCGTGCCCGGTGGTGTGTGTTCTCTCTGAGGACTCGGTGGTCCTCTCCTGGTCCGGCCCGTGTTACGACGGCGGTTCGGCCGTCACCGGATATGTGGTTGAGGTTCAGTCTGTAGACTCTGGTCACAGTGGTCTCTGGACCGAGCTTTCAGCCCACTGTAGAAGCACATCTCTGAGAGTAAGCACCGGACTCCAGCCTCAGGGACAGTACCGCTTTAGAGTGAGAGCCTGTAACACTGTGGGGGTCAGCGAACCCAGCCAGGAGTCTCCAGTGATAAAGATGGACAGCTCAGGAGAACATCATGAAGAGAAGATAAATGATTTTGTCTCCGTTACCATTGATGATTCACACAAAGTGACTGACCACTACAATGTACTGGAGAAACTAGGAGTaggaAAGTTTGGTCAGGTGTTCCGGCTGACCCATAAGGAGACGGGCCGTGTGTGTGCCGGGAAGTTCTACAAGGGTCGCCGGGCGAAGGAGAGAGATGCGGCCAAGAAAGAGATAGAACTGATGAACTTCCTCCACCACCCTAAACTGGTGCAGTGCCTGGCAGCTTACGACAACAAGCCTGAAATAGTGATGGTCATGGAGTTtaTTGCAGGTGGGGAGCTGTTTGAGCGCATTGTGGATGATAATTATGAGCACACAGAACCGTCAAGTGTGGGCTACATGCGTCAGATCGTGCAGGGGATCCAGTACATGCACCAGCAGAACATCGTCCACCTAGACCTCAAACCCGAGAacattgtgtgtgtggacaGAACCGGCATTCAGATAAAAATCATCGACTTCGGGCTCGCTGCCAAgctggATCCCTCAAACCCAGTGAAGGTGATGCACGGCACCCCTGAGTTTGTGGCTCCAGAAGTCATCAACTATGAACCCATCTGCCTGGCGACAGATATGTGGAGCATTGGAGTGATCTGTTACatactGTTGAGTGGTGAGTCTCCGTTCCTCGGGGACAGTGATTCAGAAACCCTGGCTCTAGTGACCGCAGCTCAGTGGGAGTTTGATGAGGAAAGCTTCGAGGACATCACTGACCAGGCCAAAGATTTCATCAGCTCTCTACTGCACAAAGATGTCAGAAACAGAACAGGCTCTAAAGTCTTTAGAAAAGAAGATGCAGTCCAAGCCTGAGTTCACGAAGACACCAATAGATCTTTCTGTCTTTGAGGAGTCCACTGCCGAGTTCTTCTGCCATGTTACTGGCTATCCAGACCCTGAGGTGGTGTGGCTGAAGGATGGAGAggtgctggaggaggaggagggaagtGTACAGGTGGAGTATGAGGAGGGTGGA

Function

NR:

description
PREDICTED: myosin light chain kinase, smooth muscle-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251116.3 True 4176 mRNA 0.46 17 16321578 16353831
XR_454920.3 False 2506 misc_RNA 0.52 15 16323033 16353834

Neighbor

gene id symbol gene type direction distance location
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 35685 16275677 ~ 16285893 (-)
snrnp70 snrnp70,LOC106583923 coding downstream 357102 15952844 ~ 15964476 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding downstream 379034 15936522 ~ 15942544 (-)
LOC103031937 NA coding downstream 392885 15910391 ~ 15928693 (-)
aldh16a1 aldh16a1 coding downstream 582765 15722985 ~ 15738813 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding upstream 52117 16405951 ~ 16408493 (-)
ccdc43 ccdc43 coding upstream 74270 16428104 ~ 16437125 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding upstream 339588 16693422 ~ 16763105 (-)
LOC111194193 NA coding upstream 712562 17066396 ~ 17068055 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding upstream 883540 17237374 ~ 17512950 (-)
G11071 NA non-coding downstream 9577 16307088 ~ 16312001 (-)
G11070 NA non-coding downstream 17039 16290960 ~ 16304539 (-)
G11069 NA non-coding downstream 31093 16287127 ~ 16290485 (-)
G11065 NA non-coding downstream 49429 16270600 ~ 16272149 (-)
G11036 NA non-coding downstream 96890 16169805 ~ 16224688 (-)
G11084 NA non-coding upstream 13380 16367214 ~ 16370193 (-)
G11077 NA non-coding upstream 64325 16418159 ~ 16420126 (-)
G11094 NA non-coding upstream 129735 16483569 ~ 16483886 (-)
G11100 NA non-coding upstream 136191 16490025 ~ 16490226 (-)
G11102 NA non-coding upstream 136934 16490768 ~ 16491104 (-)
strada strada,LOC107693497,LOC107658471 other downstream 316859 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 419145 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 1034843 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 1043141 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 1340009 14960832 ~ 14981569 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 2754879 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 2887922 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 3432147 19785981 ~ 19802323 (-)
G11917 NA other upstream 3644606 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 4621248 20975082 ~ 20975154 (-)

Expression


Co-expression Network