rpl19 (rpl19,LOC103032189,LOC108413899,LOC107084780,LOC105890759,LOC101075516,LOC107378566,LOC107567432)


Basic Information

Item Value
gene id rpl19
gene name rpl19,LOC103032189,LOC108413899,LOC107084780,LOC105890759,LOC101075516,LOC107378566,LOC107567432
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4244176 ~ 4250400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256297.3
GCTATGTTTTGAATCGGTATTGGTACAGCCCATGGTTTCTGCTGTAAGATGCTCTCTGTGTGAGTTTAGCAGTTAAAAAGCTGACCCAGCTGACCAGCAGCTATGAGCATGCTCAGGCTTCAGAAGAGGCTGGCGTCCAGCGTCTTGCACTGTGGCAAAAAGAAAATATGGCTGGATCCAAATGAAACCAATGAAATTGCCAATGCCAACTCTCGACAGCAGATTCGTAAACTGGTGAAGGATGGGTTGATCATTAAGAAGCCTGTAACAGTTCACTCCCGTGCCCGCTGTCGCAAGAACATGCTGGCACGGAGGAAGGGTCGTCACATGGGGCTCGGTAAGAGGAAGGGAACAGCGAATGCCCGTATGCCAGTGAAGCTATGCTGGATGAGACGGATGCGGATTCTGCGCAGACTGCTTAGACGCTACAGAGAGGGCAAGAAGATAGATAAGCACATGTACCACAATCTGTATCTAAAGGCAAAGGGAAACGTGTTTAAGAACAAGCGCATCTTGATTGAACATATTCACAGGCTCAAAGCAGACAAAGCTCGCAAGAAACTGCTGGCTGACCAAGCGGAGGCTCGTCGCTCAAAGACGAGAGAGGCTCGTAAACGCAGAGAGGAAAGACTGCAGGCCAAGAAAGAAGAAATCAGGAACCTGACCAAAGAAGAGGAGACTAAGAAATAGACAATCTGTCTATCTGAGTGTTAGCATGTGTTAGAAAtgtacatgattctttatgaataaaatacaggatgtatttaattaagatataatatatatgcgTTATTAATCTAGCTCTGAAACTTTATGCTGACTCATTTTAATCCattcagtttaattttttattaatttaaaatgttattatttactACAAAATTAAGACGACAcatgaaaaatagaaaaatgataGTGGAAAACCACTGCTTTAAAGGGCTGTACAGTCAGACAGCCTGGAAATGGTGGTTAGAAATGTACATGATACATTATGATTAAAATTCAGGATGTATAcaatgaatatataaaatataatgtgttATTGATCTAGCTCTGAAACTCTATGCTCTCATTTTAATCAATTCATttcaatttaaatacatttaaaatggtaTTATTTACTCTATAAAAAGCAAGATGACATGAAAAATTGTAcggtcagacagacagaaaattgTATCTTTTGAGATATCTCTTGTCAGTGAATAtgtgaacattgttttttttgccactttttgtGCAGCATTGTAATGGAAATATTTGCGGTTCAACATATTTGCATAATTTATGTGTCAGCAGAATAAAAgttatctactataaattgtACTG
>XM_015607606.2
TACGCCGGTTGGCTGTCCAGCTAAGGTACCTCTAACTTAGCTAATGTTTTAATCCTTAAAAAGCATGCTCAGGCTTCAGAAGAGGCTGGCGTCCAGCGTCTTGCACTGTGGCAAAAAGAAAATATGGCTGGATCCAAATGAAACCAATGAAATTGCCAATGCCAACTCTCGACAGCAGATTCGTAAACTGGTGAAGGATGGGTTGATCATTAAGAAGCCTGTAACAGTTCACTCCCGTGCCCGCTGTCGCAAGAACATGCTGGCACGGAGGAAGGGTCGTCACATGGGGCTCGGTAAGAGGAAGGGAACAGCGAATGCCCGTATGCCAGTGAAGCTATGCTGGATGAGACGGATGCGGATTCTGCGCAGACTGCTTAGACGCTACAGAGAGGGCAAGAAGATAGATAAGCACATGTACCACAATCTGTATCTAAAGGCAAAGGGAAACGTGTTTAAGAACAAGCGCATCTTGATTGAACATATTCACAGGCTCAAAGCAGACAAAGCTCGCAAGAAACTGCTGGCTGACCAAGCGGAGGCTCGTCGCTCAAAGACGAGAGAGGCTCGTAAACGCAGAGAGGAAAGACTGCAGGCCAAGAAAGAAGAAATCAGGAACCTGACCAAAGAAGAGGAGACTAAGAAATAGACAATCTGTCTATCTGAGTGTTAGCATGTGTTAGAAAtgtacatgattctttatgaataaaatacaggatgtatttaattaagatataatatatatgcgTTATTAATCTAGCTCTGAAACTTTATGCTGACTCATTTTAATCCattcagtttaattttttattaatttaaaatgttattatttactACAAAATTAAGACGACAcatgaaaaatagaaaaatgataGTGGAAAACCACTGCTTTAAAGGGCTGTACAGTCAGACAGCCTGGAAATGGTGGTTAGAAATGTACATGATACATTATGATTAAAATTCAGGATGTATAcaatgaatatataaaatataatgtgttATTGATCTAGCTCTGAAACTCTATGCTCTCATTTTAATCAATTCATttcaatttaaatacatttaaaatggtaTTATTTACTCTATAAAAAGCAAGATGACATGAAAAATTGTAcggtcagacagacagaaaattgTATCTTTTGAGATATCTCTTGTCAGTGAATAtgtgaacattgttttttttgccactttttgtGCAGCATTGTAATGGAAATATTTGCGGTTCAACATATTTGCATAATTTATGTGTCAGCAGAATAAAAgttatctactataaattgtACTG

Function

symbol description
rpl19 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within hemopoiesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL19 (ribosomal protein L19).

NR:

description
PREDICTED: 60S ribosomal protein L19-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02885 RP-L19e, RPL19; large subunit ribosomal protein L19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256297.3 True 1329 mRNA 0.39 6 4244176 4250400
XM_015607606.2 False 1285 mRNA 0.38 6 4245502 4250400

Neighbor

gene id symbol gene type direction distance location
trnac-gca_4 NA coding upstream 92774 4151331 ~ 4151402 (+)
trnac-gca_3 NA coding upstream 93064 4151041 ~ 4151112 (+)
trnac-gca_2 NA coding upstream 95518 4148587 ~ 4148658 (+)
trnac-gca_1 NA coding upstream 97469 4146636 ~ 4146707 (+)
mapk8ip3 NA coding upstream 187689 3991980 ~ 4056487 (+)
LOC103033979 NA coding downstream 13399 4263799 ~ 4285939 (+)
LOC103026143 LOC108412542,LOC107690312,LOC107567496,LOC107567486,LOC107754252,LOC107731081,LOC107653457 coding downstream 172354 4422754 ~ 4445870 (+)
LOC103024696 LOC108413965,LOC107568576,LOC107690307,LOC108260811 coding downstream 252835 4503235 ~ 4527298 (+)
LOC103024379 slc17a7a,LOC108413988,LOC108260804,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding downstream 279247 4529647 ~ 4563173 (+)
LOC103023536 LOC103023536,LOC108413997,LOC108258948,LOC103392975,LOC107653435,LOC104930345,LOC105894964 coding downstream 316296 4566696 ~ 4579096 (+)
G7808 NA non-coding upstream 129531 4114128 ~ 4114645 (+)
G7821 NA non-coding upstream 130559 4108636 ~ 4113617 (+)
G7819 NA non-coding upstream 142643 4101084 ~ 4101533 (+)
G7810 vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678 non-coding upstream 149176 4071830 ~ 4095000 (+)
G7847 NA non-coding downstream 100441 4350841 ~ 4351202 (+)
G7942 NA non-coding downstream 110395 4360795 ~ 4361018 (+)
G7943 eftud2,LOC106607257,LOC107690313,LOC107731090,LOC107653466 non-coding downstream 112782 4363182 ~ 4390313 (+)
LOC111194157 NA non-coding downstream 152568 4402968 ~ 4407798 (+)
G7969 NA non-coding downstream 236780 4487180 ~ 4489198 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 314934 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 791510 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1401962 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1685832 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 2163635 2050283 ~ 2080541 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 502396 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 935134 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1081665 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1478522 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 2107002 6357402 ~ 6376704 (+)

Expression


Co-expression Network