jpt2 (hn1l)


Basic Information

Item Value
gene id jpt2
gene name hn1l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3981473 ~ 3989954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256302.3
GTCAGCGCGTCCGAgtgctttttgtgtgtgtggccaAGTtgttggagcagtgttagcGGGACTCGTGTTTCGGCGCTGCGGATTAACGGAGGGCTCTTTACCTTAGTTACCTGGCCTGCTGGGAGGAAACAAGACACGATGACTTCGACTAACATGTTTCAGGGCCTGGAAGAGGGAGCTAAACCGAGCTCTAGGGTGTTGCGACCTCCTGGTGGTGGCAGCAGCAATATATTTGGCGCTTGTGATGACTCTGCAGCTTCCAGACGGCCAAACAAGATGGCCTCTACGATTTTTGCACCCCCAGAAGAGGCCCAAGGAAGTCCGAAGCGCTCCAATCCCCCAgGTGGCAAGAGCAGTGGGATTTTTGGAGGACCTGAAGCTCCAGCTGCACAGGCTAAGCCCCAGCGTCAAGGTGCAGCAACTAGCAACATCTTTGCAGGACCAGAGTCAAACCCACCTGCTGTTAAAAGTCATCCAAACAAACCCAAGGACAACATTGGTGTGGGTGCTCCTGTCACGCCTGAGCCAGCCCCTCAGCCGAAAGCAGTTGAAGAAGTGAAGGTGCCTGTTACACCTCAACCAACACCTGTAAAGGAGGACCCTCCGGCTGCACCCACAGCAACCCCCACAGCCACCCCAGATGCTAAGCTTTCACCACATCCATCAGAGAAGGACCACGAGCCACGCCTTGCACCGGTTCCTCGCTCGCACAACAGAGTGCTGAACCCCCCTGGTGGAAAATCCAGCGTGGTCTTCTACTGACCAGTGCCACTTATCTCTCGCTTCCCCACTCACTCCGTTCTCTCTTACTAACACTGCTAACTATGCTTCTTTCTTACTTTGCTCGTACGTTTCTTAGTTTGTCCAgtcttcttttttgttgttttgtttctttatattttcttacagtggcttctttctctcattccttAACTCTTGCACTTTCTAACCCATTCCTATACACtcattctgcttttttttttttttgtttttgtatgttcATATAGGAGGGTTTGAGTGATCGGTTTCTGCCTCAATCCAATGGTTGACTCAGTCAAATGGTTCATTTTGATCCAGTCAGGAtcagctgagtgtgtgtgctgattgTGAAGATGCTCTCTGACTTTGATAATGTATAGAAATACAATCATACTCTCATGATTTATGATTACGACGTAACTGATTGGCGTCTGTGTATCGTTCAACTGGAaccactgtctgtctgtttccaCTGTGGGAAACTCACTTGTGTTAATGCAGTGGTACCTGACCCTCTGTCTTGGAGGTCCTACTGGTCTGCATGgtttttagcacttttaaaCCCCCGTTACCAACTGCCGTTGTCCTACATGCATCCAGAGTGATCTGATTGCAAATGGTTGATTAAATGCATAGGTGTTTAAACCTGGggttttaaatgcatctctTTTGAGCACTTTTGATTGGATTTCTTACATACTTTTCATTAAAGGAGACTGGGTGGTTACTGTAAGTCATCTATTAGTGTGGTTTGAGTCCTCAGCACGCAAGTATCGTCATTTTCCATTTCATTGTTATTGTAGCATGCTCAGCTAACCCTTGCGGGGGGTGGACGGATGGCAGTATTACGGTTATTCTTTATGGTTTGTCAGTGACCTGGTTAATGTGGGCACATCACGACCCTTTGGTGTTAATACTACAACAATAATGTGGTCTTCTGTGTCTCTGACAACATCCGTATGTGTTTTGAGTGACCAGATTGCGGTAAAAATGTAATCCTTGAGACATTACATTACTGgccatttataacatttatgatTGGATCACCCAGGATGCATGTTTATGCCAGGTGTGAATGGGGGTTTTGCACACCTGATTTCACTCAGAAAAAAGGGCTTGTAATAAGTGCACTGCAGTAGGTTCTCAGGACTGGGTCTGGGGCAGTTTGTTCTAACATACCTCTGAAACTTTGGTGAGCGTTCTTTTTCGCTCATCGTGACTTGCAGCCATGCTGGAAGCAGCTCCTATTGATCTTGTGACTTGTTCTCTTTCTGCCTTTCTGttaagtgattgattgattgtaatGCCACTGGGTTCTCAGGGAGAATAGGGATTCGAGGACCCGGTGGAGGACCTGATGGGAGACCTGGTGACAATGTTTTTAGATGTAAGACAATGTACTTAAGAACACACACTGTTCAGGGAAATGCAGGCAAAAGCAAAGGTGTCAACATACTGAAACGAATCCACTCCCATGTATAGTAGGTTTTCCATGAATACACTAAACCAAAGcacataaacaaacaattatAAAGAGGTCATCAATACAACTGAAGTACTGTCAAGTGTATGGTGACCCTCTACAATGCATATAgtgctttaaatgaatataCTACAGTGTTCTTACTGACATCTAACTGCCATAgctttaaaaaggttaaaaacaaaaaacgtttttttatttCGCCCCAATGATTGTGATCTGAAGCTGCCATTggttctttacattgttttatgGTTTCATGGTAAATGGACCATTAGGCAGTTACCATTCTGGAGCTACAAAGATTTTGATGCTGTTAATACAAAACATTCTAATAATAGGAAGCAATAGGCAATACTAAAATATCTGCCCATTGTCTTTTAACTATAAATGTGCTTAAGTCAGTGGCTTGGAAGATGCTGACTGTGGCCTGAGGATCATGACCTTTAATCTCTGGTCATGCTGCTTTGCCATCAGTGTCTAATTTCACATTATTGAAGGAGGCATGTGACCATTATGATGTCGGTAGCACTGCAAGTCATTGGTGAATTCCTAGTGATTAGGTGGGGTAAAAATGCATGATACAAAAGTTTGTGTGCTACAGTTGTCAGATAGAGGTTAGTCTAAATACTGAAGTATTCCTTAACAAATTCAAGTGTAAATCTGTTTGactatcttttatttttattttttttgtttaattaatgttGTATTTGTACAGTCATTAAATCTCATGGTTTTCAGGCAGAGGTGTCCATCATAAGTCCTAGAGGTGCTAGTGTCTAGCACTGCATGTAACTTGACCCACCTACTAAACTTAGTAATGAATTGCtgtaaatgaattaaatcaaaTGTGTTTAAGCAAAAACTGTCAAACCCTGTACCCCTAGGACTAAAGATGGGCCCTCCTGATATTAGGACATAAATCCATGTGAATAccaaatgcacacaaaaagtAGAAGCTCTGGGAGTCCTGTTTTGTACCGAATGCCAAAGTGTACTAAGTTAGTTTTCGGTTATTGTATGAAAAACATttcatttgatttgtttttctaCCTTCACTTTAGCCTGTCATTCTAAAGCACAGCAGCATTGGGAAGGCCCAGCTTGTAACACATTGgtgtgaaaagtgttttttctcaCATACTGCTGTCTGCCCTGCCCAAAGTGCCAGTGTGGTATTGAGGCAATGTCACAAACGTCtgtaataaacatctattttgaTGATTCATA

Function

NR:

description
hematological and neurological expressed 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256302.3 True 3475 mRNA 0.43 5 3981473 3989954

Neighbor

gene id symbol gene type direction distance location
tmem11 tmem11,LOC107568541,LOC107661149,LOC107552488 coding upstream 44253 3933164 ~ 3937220 (+)
phospho1 phospho1,LOC107745765,LOC107661127,LOC107576079,LOC107755127,LOC107689057 coding upstream 62795 3913539 ~ 3918678 (+)
znf652 znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758 coding upstream 76724 3880530 ~ 3904749 (+)
phb phb,LOC107661032 coding upstream 106525 3869409 ~ 3874948 (+)
LOC103042028 NA coding upstream 201778 3740435 ~ 3779695 (+)
mapk8ip3 NA coding downstream 2026 3991980 ~ 4056487 (+)
trnac-gca_1 NA coding downstream 156682 4146636 ~ 4146707 (+)
trnac-gca_2 NA coding downstream 158633 4148587 ~ 4148658 (+)
trnac-gca_3 NA coding downstream 161087 4151041 ~ 4151112 (+)
trnac-gca_4 NA coding downstream 161377 4151331 ~ 4151402 (+)
G7795 NA non-coding upstream 26764 3953730 ~ 3954709 (+)
G7789 NA non-coding upstream 37414 3941831 ~ 3944059 (+)
G7772 NA non-coding upstream 125227 3855203 ~ 3856246 (+)
G7695 NA non-coding upstream 184783 3787905 ~ 3796690 (+)
G7672 NA non-coding upstream 313528 3666976 ~ 3667945 (+)
G7785 NA non-coding downstream 66904 4056858 ~ 4063296 (+)
G7812 mrps34,LOC107567325 non-coding downstream 77200 4067154 ~ 4069092 (+)
G7810 vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678 non-coding downstream 81876 4071830 ~ 4095000 (+)
G7813 NA non-coding downstream 82940 4072894 ~ 4094331 (+)
G7819 NA non-coding downstream 111130 4101084 ~ 4101533 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 52231 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 528807 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1139259 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1423129 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1900932 2050283 ~ 2080541 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 762842 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1195580 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1342111 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1738968 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 2367448 6357402 ~ 6376704 (+)

Expression


Co-expression Network