tmem11 (tmem11,LOC107568541,LOC107661149,LOC107552488)


Basic Information

Item Value
gene id tmem11
gene name tmem11,LOC107568541,LOC107661149,LOC107552488
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3933164 ~ 3937220 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256305.3
ACGTCACCACCAACGCACTCGCACTCCAAGATGGCGTCGTTCGGAAGGAGGCGCGGTGTCCCAGTGAACAGGGAGAGGGCAGTGATGGCGGCAGCGGAGTGTTACATCGTTCACGAGATCTACAACGGCGAGAATGCGCAGGAGCAGTTCGAGTATGAGCTGGAGCAGGCCCTGGAGGCGCAGTACCGCTACATCGTGATAGAGCCAACACGGATCGGCGATGAGACGGCCCGCTGGGTGGCCGTGGGGAACTGCCTGCACAAGTCGGCCGTGCTGGCAGGAGCCGCCTGCCTCCTGACGCCGCTGGCCCTCCCTGCTGACTACTCGCGCTACGTGGCGCTGCCGGCGGGGGCGCTGAGCCTGGCCTGCGCCGCTCTCTACGGCATCTCCTGGCAGTTCGACCCGTGCTGCAAGTATCAGGTGGAGTACGACAGCCAGAAGCTGTCTCGGCTGCCCCTGCACACGCTAACTTCCTCCACGCCCGTGGTGCTGGTGCGGCGGGACGACGTGCACAGAAAGAGACTGCACAACACGATAGCGCTGGCCGCCCTGGCTTACTGCGTCAAGAAGATCTACGAACTGTACTCTGTATGAATGAGGCGCCGCTGCACATACACACTGACGCGAACATACACACGATACTGATACAACATCTCACACAACATCGCGCGCACACACTGGCAGGGAGGTCAGAAACACTACTAaatacaaacagacacacaagcGAAATGGAAACAGGCAGACAGGTGCACGGGCGGAGAGAGAACGGTCACGTGGAGGCGGGGAAAAAAGGAATAAATGGAACGAAATGAAAAATCAGCGCTCTCCCAGACGCTCGTTCCCCTCTGTGCTCTCAAACGGTGGAAGAGTGGATGACCGGGACAGGACAGGAGGGTGACCGGACCTAATGACAAGAAGACGGGACAGCTCAGGGGGTCTATGGTAAAATTAGAAGCAAGATTCTTTCccctctgttttttattttagtgacaTCACCAATGCACTCGACTTCCATCTCCCCCGGTCCCTCGGTGCCCTCCCAGCCTCGCCCCGCCCTGCCGCGCACGCTGAGCCCCCCGCACTTGGGCAGTGACCCGTCGGACTGCGAGTGTGTGCTGGACAGGCCAACAGACAGACATGTTTTAAGTATGACCTTTGAGCCCTGTCTCCCCTATCCTCCCCGTGTAGTTTTACTGTACCCTGCCTTGGCGCATCACCTTTTCATTAAACAGTAGGAGATTTAACCTCAA

Function

symbol description
tmem11 Predicted to be involved in inner mitochondrial membrane organization. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human TMEM11 (transmembrane protein 11).

NR:

description
PREDICTED: transmembrane protein 11, mitochondrial isoform X1

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256305.3 True 1250 mRNA 0.58 2 3933164 3937220

Neighbor

gene id symbol gene type direction distance location
phospho1 phospho1,LOC107745765,LOC107661127,LOC107576079,LOC107755127,LOC107689057 coding upstream 14486 3913539 ~ 3918678 (+)
znf652 znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758 coding upstream 28415 3880530 ~ 3904749 (+)
phb phb,LOC107661032 coding upstream 58216 3869409 ~ 3874948 (+)
LOC103042028 NA coding upstream 153469 3740435 ~ 3779695 (+)
LOC103039250 LOC108434931,LOC108278793 coding upstream 276545 3642133 ~ 3656619 (+)
jpt2 hn1l coding downstream 44253 3981473 ~ 3989954 (+)
mapk8ip3 NA coding downstream 54760 3991980 ~ 4056487 (+)
trnac-gca_1 NA coding downstream 209416 4146636 ~ 4146707 (+)
trnac-gca_2 NA coding downstream 211367 4148587 ~ 4148658 (+)
trnac-gca_3 NA coding downstream 213821 4151041 ~ 4151112 (+)
G7772 NA non-coding upstream 76918 3855203 ~ 3856246 (+)
G7695 NA non-coding upstream 136474 3787905 ~ 3796690 (+)
G7672 NA non-coding upstream 265219 3666976 ~ 3667945 (+)
G7665 NA non-coding upstream 304483 3627962 ~ 3628681 (+)
G7664 NA non-coding upstream 305290 3627648 ~ 3627874 (+)
G7789 NA non-coding downstream 4611 3941831 ~ 3944059 (+)
G7795 NA non-coding downstream 16510 3953730 ~ 3954709 (+)
G7785 NA non-coding downstream 119638 4056858 ~ 4063296 (+)
G7812 mrps34,LOC107567325 non-coding downstream 129934 4067154 ~ 4069092 (+)
G7810 vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678 non-coding downstream 134610 4071830 ~ 4095000 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 3922 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 480498 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1090950 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1374820 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1852623 2050283 ~ 2080541 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 815576 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1248314 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1394845 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1791702 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 2420182 6357402 ~ 6376704 (+)

Expression


Co-expression Network