znf652 (znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758)


Basic Information

Item Value
gene id znf652
gene name znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3880530 ~ 3904749 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256308.3
AGCTAAACCGCCACGTAGCGCGAGAGCTCGGTCGCAGCCGGCCTCcagttttggattttttttatatatccccAGTATAAAAAGTAGCTAACAGGGCTAGCAGCTGCAGCCCGCTAGCGTGTCCCTTAACTGCAGGCGGCCGGAAAGAACTCGCTAACACTAAACAAATTAGTGGGTTTTTCCTCCTTCTTTTTCTGTGGATCTTCTTTTACTCTCTTGCAAGTTAGAGTGGAGGAGTGCACGCGCCTAGAGAGAGGGCGCTCGCGCTACGGGTGAGAAGCAGTGCAACGACGAGAAGTGCGGAGcagccctctctctccttccctacCGCCACAAGTTAATTTTTTTGCGTTTttgcattttcttatttttccacGGAAATGGCAAGCGCGCACTCCCGCGAGACCCTCACAAGAGCAGCCGTGCAGGCTGTAAATGGAAGCAGGCTTCTGAAGCAGATCTGGCAGGCTGCTATGACTGTGAGAGGTTAATCTCAGCATAGAATCCTTGGCATCTTCAACTGATTCAGCAGATATTAGCAGTGGTTGGGAGGTCCATACTGTCATCTACAAAGAGCTCTCAGGACAAGCGGTGGAGGCACGATCTGACCCAGGAGCAGCTTTGGCCCAGCATGAGCACGGCGCACATGTGATTGGCTTCGTAGAAAAAGGGAAGCCACGGATCTGCTGAACCTTTCTCTCCATCCGTCTTCTGATGCGGAGGCCATGGAGGCTCAGtttggtttaggttgaggtgtcgCTGGGGTCCCACCCCTTCCTTTCCTCTCCTGTCTCCACCCCTCCTCTTGCACTCTCAGGGAGGGGTAGGATCTGACCCTCTTTGCTTCTTTTTATCTGCCTAGAGGAAACACGAGCCACGCTGAGAGAACAGTACAGGCAACACACAAAGCTCTCGCTCTCTCGACACACACACTTGACATCAAACACATACCGATGAAGTCGTGCCAGACCCTAAAGGAAGAGGTATCTGATCTAGAAGCCATGTCGCAGGACGAAGGGCAAAGGGCTCATCCTGCACAGacctactaccaccaccaccacaccccTACAGCGGACAGCGACCTATCAGCGAAGCTCTACAGGCAGGAGGCCGGGGCCAAGCCCTTCTCAGTGTTGGTCGACAACAAGATGGCTGCCAAATCAGTAACGCAGGTGACCCCTAACCTAGACCCAAACCCGAACGTTCCCCTCCAGCAGTACTACAAAGAAGGTTCCGGGCCTGCCGGGTCCGAGGGAGCCACGAGAGCTGGACCCACGAACGAAGGAACTTCCGAAGGCACAGAAGAAGAGGATGAAGgccaggaggaggaggaagaagaagaggaagaggagttTAGCAAACGAACACAAATCATAGTGGAGGTGAACCTCAACAACCAGACCTTGCACGTTTCTAAAGGAGAGAAGAGTAGCCCAGCGAACCCTGCCGGAGAGGCAAAAAGCAACagtgaagaggaggaagaagaggaggaggaggaggaggaagaagaggaagtgGAGGAGGAAGACAGCATAGAAGAGGAAAGttcagaggaagaggaggatctGGATGAAGACGAGGAAGAAGAGAACGGGAGCCGAAGACCGAGGGCCAAGCGGCCACTCCGAGGTCGAATCAGAGCCAAGCCACGCCGAAAGACCCGGCGTGTAACCAAGCCATCCACTGCTGTAGCAACTGCAGTTACCACTGGCATGACCACCAGGGGGCGGAGGAAGAGTGCCGAAGTCCCGCCCCAAAAGCGCAGATCCAGCCGTGATGGAAAGAGCTCCGCCCCTTCCTCCGCATCAGGAGGTGCGGGAAAAGGCGATGGAGAGGAGCGTGAGACATTGACCTGTGAGAAATGCCCGCGTGTGTTCAACACGCGCTGGTACCTGGAGAAGCACATGAATGTCACGCACAGGCGCATGCAGATCTGCGACAAGTGCGGGAAGAAGTTTGTGCTGGAAAGCGAGCTGGCGCTGCATCAGCAAACGGACTGCGAGAAGAACATACAGTGTGTTTCGTGTAATAAATCCTTTAAGAAGCTGTGGTCTCTTCATGAGCACATTAAGATTGTCCATGGCTTTGCCGAGAAGAAATTTGCCTGTGAGATCTGTGAGAAGAAGTTCTACACAATGGCCCATGTCCGCAAGCACATGGTCGCTCACACTAAGGACATGCCGTTTACTTGTGAAACCTGTGGAAAATCCTTTAAGCGCAGCATGTCTCTAAAGGTGCACTCGCTTCAGCACTCAGGAGAAAAGCCTTTCCGCTGTGAGAACTGTGATGAGAGGTTCCAGTATAAGTATCAGCTGCGCTCCCATATGAGCATCCACATCGGACACAAGCAGTTCATGTGCCAGTGGTGTGGCAAAGACTTCAACATGAAGCAGTATTTCGATGAGCATATGAAGACGCACACAGgtGAGAAGCCGTTTATCTGCGAGATCTGCGGGAAGAGCTTCACCAGTCGGCCGAATATGAAGCGCCACCGCAGAACACACACCGGAGAGAAGCCTTATCCGTGCGAGGTGTGCGGCCAGCGCTTCCGCTTCTCCAACATGCTCAAAGCGCATCGTGAAAAGTGCTTCCGGGTCACCAGCCCCATGACCCTGCAGCCCTCCACCATCCCCCTTCCCATCCATATACCAGGCCACACCCCCTCTTCCTCTGGCCACTCCCCCAGCACACCCCAGCCGTCCCAGGCTACTTCCACCATTGCGACGGTCGGTCAGGGAATGATCGGCTCCGCCCCCGGGACCCTCGGTCAGAGAGGAGGGATCGGACACGGCTTTTCTCATTTGCATATGCCGGCCGCACCCACACAGCACCATCAATCGCACACCCACACCCCTGTCCATCACTCTGGACACACCCCCATGTCGAGTCAGCACCTTTCCGTCCCATCCTCTCTTCTGCCCCCGCCTCCTGCCCTGTTTAAGAGCGAGCCAATCAACCACTGCGCACACGAGGAGACGTATCTGAGACAAGGGTCTGCGCAGCACCACTGAAAACTACGCAGAACCACCACGCAGAAACATGCAAAACCATGTAAAACCGCACAACACAGTCTGCCCTCCCCTCAGCCAAGAGAAGAGGGCACAGCTTCTCAGATACATACTGTCAGCTCAATACTGTAAGGATGGAATTCAGCGTTAATGTGTTTCTGAGGAAGAAACACTCAATCGCTTACTGTCGGCAGAAGCTCACACATGATCAGAAACGATTCTTCAGATGATGACCTCAataaactctctctttctctctcaaaagAAAGTTCTTACAGACAAATTTACAAAGCATGGTTTTACACCTCAAATACCGTTACGGATCGATTCCACTTACATCATAATGATGAAAACCTGCCACTGCATTCAGTTGGCACATCTCTCTCAGTCTCGGGCTCTTGTTTCTCTCTATTGCTGTCTCTTTGTGCCTCTCGCGCTTTCCCTTGCACTTTCTCTTGCTCTAccgtttttctctgttttgctTTTTACTCTTGTAGTCTTGCGCTCGTGTTTTCACTCTTGTCTCACCTTCTCTCATTCTCGTGCTGTGTCTTTTCCGTGCCTCACTCCTTCTTTTCTTGGCTCTCACGTTTCTTTTTCTCTGGCTATCCTGTCCCATCCTTTCTCtacctatttttttgttttatctcctttttttcttttttttttacacatttttc
>XM_007256309.3
acagaAGTGAAACGTTTGTGGTtaggagtgtgtatgtgtgtgtgcgcctaTATTTGTGTGAGTGGTAGTGAGATTTTTAGATCTCTGCACCTTAACCAGACAGcagtttcatttctctctcccacacacacacgcacacagactcacacacacacacacacactctcgtcTACGGGATGGTGAAAGCCTGACTTGTCATTCGAGAACAAAACATGGTTTAACTAGATGGCATCTGTGTTTCGAGGTCATTTTTTTTAGGCCACCAGGCTGTAAATGGAAGCAGGCTTCTGAAGCAGATCTGGCAGGCTGCTATGACTGTGAGAGGTTAATCTCAGCATAGAATCCTTGGCATCTTCAACTGATTCAGCAGATATTAGCAGTGGTTGGGAGGTCCATACTGTCATCTACAAAGAGCTCTCAGGACAAGCGGTGGAGGCACGATCTGACCCAGGAGCAGCTTTGGCCCAGCATGAGCACGGCGCACATGTGATTGGCTTCGTAGAAAAAGGGAAGCCACGGATCTGCTGAACCTTTCTCTCCATCCGTCTTCTGATGCGGAGGCCATGGAGGCTCAGtttggtttaggttgaggtgtcgCTGGGGTCCCACCCCTTCCTTTCCTCTCCTGTCTCCACCCCTCCTCTTGCACTCTCAGGGAGGGGTAGGATCTGACCCTCTTTGCTTCTTTTTATCTGCCTAGAGGAAACACGAGCCACGCTGAGAGAACAGTACAGGCAACACACAAAGCTCTCGCTCTCTCGACACACACACTTGACATCAAACACATACCGATGAAGTCGTGCCAGACCCTAAAGGAAGAGGTATCTGATCTAGAAGCCATGTCGCAGGACGAAGGGCAAAGGGCTCATCCTGCACAGacctactaccaccaccaccacaccccTACAGCGGACAGCGACCTATCAGCGAAGCTCTACAGGCAGGAGGCCGGGGCCAAGCCCTTCTCAGTGTTGGTCGACAACAAGATGGCTGCCAAATCAGTAACGCAGGTGACCCCTAACCTAGACCCAAACCCGAACGTTCCCCTCCAGCAGTACTACAAAGAAGGTTCCGGGCCTGCCGGGTCCGAGGGAGCCACGAGAGCTGGACCCACGAACGAAGGAACTTCCGAAGGCACAGAAGAAGAGGATGAAGgccaggaggaggaggaagaagaagaggaagaggagttTAGCAAACGAACACAAATCATAGTGGAGGTGAACCTCAACAACCAGACCTTGCACGTTTCTAAAGGAGAGAAGAGTAGCCCAGCGAACCCTGCCGGAGAGGCAAAAAGCAACagtgaagaggaggaagaagaggaggaggaggaggaggaagaagaggaagtgGAGGAGGAAGACAGCATAGAAGAGGAAAGttcagaggaagaggaggatctGGATGAAGACGAGGAAGAAGAGAACGGGAGCCGAAGACCGAGGGCCAAGCGGCCACTCCGAGGTCGAATCAGAGCCAAGCCACGCCGAAAGACCCGGCGTGTAACCAAGCCATCCACTGCTGTAGCAACTGCAGTTACCACTGGCATGACCACCAGGGGGCGGAGGAAGAGTGCCGAAGTCCCGCCCCAAAAGCGCAGATCCAGCCGTGATGGAAAGAGCTCCGCCCCTTCCTCCGCATCAGGAGGTGCGGGAAAAGGCGATGGAGAGGAGCGTGAGACATTGACCTGTGAGAAATGCCCGCGTGTGTTCAACACGCGCTGGTACCTGGAGAAGCACATGAATGTCACGCACAGGCGCATGCAGATCTGCGACAAGTGCGGGAAGAAGTTTGTGCTGGAAAGCGAGCTGGCGCTGCATCAGCAAACGGACTGCGAGAAGAACATACAGTGTGTTTCGTGTAATAAATCCTTTAAGAAGCTGTGGTCTCTTCATGAGCACATTAAGATTGTCCATGGCTTTGCCGAGAAGAAATTTGCCTGTGAGATCTGTGAGAAGAAGTTCTACACAATGGCCCATGTCCGCAAGCACATGGTCGCTCACACTAAGGACATGCCGTTTACTTGTGAAACCTGTGGAAAATCCTTTAAGCGCAGCATGTCTCTAAAGGTGCACTCGCTTCAGCACTCAGGAGAAAAGCCTTTCCGCTGTGAGAACTGTGATGAGAGGTTCCAGTATAAGTATCAGCTGCGCTCCCATATGAGCATCCACATCGGACACAAGCAGTTCATGTGCCAGTGGTGTGGCAAAGACTTCAACATGAAGCAGTATTTCGATGAGCATATGAAGACGCACACAGgtGAGAAGCCGTTTATCTGCGAGATCTGCGGGAAGAGCTTCACCAGTCGGCCGAATATGAAGCGCCACCGCAGAACACACACCGGAGAGAAGCCTTATCCGTGCGAGGTGTGCGGCCAGCGCTTCCGCTTCTCCAACATGCTCAAAGCGCATCGTGAAAAGTGCTTCCGGGTCACCAGCCCCATGACCCTGCAGCCCTCCACCATCCCCCTTCCCATCCATATACCAGGCCACACCCCCTCTTCCTCTGGCCACTCCCCCAGCACACCCCAGCCGTCCCAGGCTACTTCCACCATTGCGACGGTCGGTCAGGGAATGATCGGCTCCGCCCCCGGGACCCTCGGTCAGAGAGGAGGGATCGGACACGGCTTTTCTCATTTGCATATGCCGGCCGCACCCACACAGCACCATCAATCGCACACCCACACCCCTGTCCATCACTCTGGACACACCCCCATGTCGAGTCAGCACCTTTCCGTCCCATCCTCTCTTCTGCCCCCGCCTCCTGCCCTGTTTAAGAGCGAGCCAATCAACCACTGCGCACACGAGGAGACGTATCTGAGACAAGGGTCTGCGCAGCACCACTGAAAACTACGCAGAACCACCACGCAGAAACATGCAAAACCATGTAAAACCGCACAACACAGTCTGCCCTCCCCTCAGCCAAGAGAAGAGGGCACAGCTTCTCAGATACATACTGTCAGCTCAATACTGTAAGGATGGAATTCAGCGTTAATGTGTTTCTGAGGAAGAAACACTCAATCGCTTACTGTCGGCAGAAGCTCACACATGATCAGAAACGATTCTTCAGATGATGACCTCAataaactctctctttctctctcaaaagAAAGTTCTTACAGACAAATTTACAAAGCATGGTTTTACACCTCAAATACCGTTACGGATCGATTCCACTTACATCATAATGATGAAAACCTGCCACTGCATTCAGTTGGCACATCTCTCTCAGTCTCGGGCTCTTGTTTCTCTCTATTGCTGTCTCTTTGTGCCTCTCGCGCTTTCCCTTGCACTTTCTCTTGCTCTAccgtttttctctgttttgctTTTTACTCTTGTAGTCTTGCGCTCGTGTTTTCACTCTTGTCTCACCTTCTCTCATTCTCGTGCTGTGTCTTTTCCGTGCCTCACTCCTTCTTTTCTTGGCTCTCACGTTTCTTTTTCTCTGGCTATCCTGTCCCATCCTTTCTCtacctatttttttgttttatctcctttttttcttttttttttacacatttttc

Function

symbol description
znf652 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF652 (zinc finger protein 652).

NR:

description
PREDICTED: zinc finger protein 652

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256308.3 True 3688 mRNA 0.52 6 3880530 3904749
XM_007256309.3 False 3526 mRNA 0.52 6 3894477 3904749

Neighbor

gene id symbol gene type direction distance location
phb phb,LOC107661032 coding upstream 5582 3869409 ~ 3874948 (+)
LOC103042028 NA coding upstream 100835 3740435 ~ 3779695 (+)
LOC103039250 LOC108434931,LOC108278793 coding upstream 223911 3642133 ~ 3656619 (+)
LOC111194267 LOC101882592,LOC106911506,LOC107698541,LOC107722802 coding upstream 236256 3628687 ~ 3644274 (+)
ifi35 NA coding upstream 292765 3573242 ~ 3587765 (+)
phospho1 phospho1,LOC107745765,LOC107661127,LOC107576079,LOC107755127,LOC107689057 coding downstream 8790 3913539 ~ 3918678 (+)
tmem11 tmem11,LOC107568541,LOC107661149,LOC107552488 coding downstream 28415 3933164 ~ 3937220 (+)
jpt2 hn1l coding downstream 76724 3981473 ~ 3989954 (+)
mapk8ip3 NA coding downstream 87231 3991980 ~ 4056487 (+)
trnac-gca_1 NA coding downstream 241887 4146636 ~ 4146707 (+)
G7772 NA non-coding upstream 24284 3855203 ~ 3856246 (+)
G7695 NA non-coding upstream 83840 3787905 ~ 3796690 (+)
G7672 NA non-coding upstream 212585 3666976 ~ 3667945 (+)
G7665 NA non-coding upstream 251849 3627962 ~ 3628681 (+)
G7664 NA non-coding upstream 252656 3627648 ~ 3627874 (+)
G7789 NA non-coding downstream 37082 3941831 ~ 3944059 (+)
G7795 NA non-coding downstream 48981 3953730 ~ 3954709 (+)
G7785 NA non-coding downstream 152109 4056858 ~ 4063296 (+)
G7812 mrps34,LOC107567325 non-coding downstream 162405 4067154 ~ 4069092 (+)
G7810 vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678 non-coding downstream 167081 4071830 ~ 4095000 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 427864 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1038316 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1322186 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1799989 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 1832967 2039387 ~ 2047563 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 19536 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 848047 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1280785 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1427316 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1824173 5728922 ~ 5729500 (+)

Expression


Co-expression Network