ppm1d (ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958)


Basic Information

Item Value
gene id ppm1d
gene name ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24690075 ~ 24699460 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258876.3
GCCGCCCCGCGCCGGGTGACGTCACGGCTCTCGGAGCATGCCTACAAAGGTCGAAAATAAACAAAGAGTGAAGAAAATCCGCGAGGATTTCAGCTTTTAACCCAGAATTCAGCCGTTTCCGCGGGATCCACTCGGTGTCCGCGCTGTATCCGCGCTGTGGGCGGGATGGAGAAGGTGTTTTCGTGCCGGGCGAGCGTTTATCTGGACCAGGGCGGGCGGAAATACATGGAGGATTTTGTGCAGATTAAGCGGGACGCTGAGCCGAGCGAGGCCGAGCTGAGCGCCGCGGAACCGGGCGAGACTGAACCGGCGGAACCGGGAAACGAGCAGCTTAAAAACGGCCTTGGAGACCGTACTCCCGACCCGGAGACACCGGAGGAACCGGAGGAGCCGCGGGCCGGTGCTCCAGCAGACTGtagccgcagcagcagcagcagcggcggggAGGAGAGCGGCACTGCCcgggagcaggaggaggaggagagcggCTCCGCGGCCCGCTCCTGGCCCGTCGCTTTCTACGCGGTGTTTGACGGTCACGGCGGCCCGGACGCGGCGAGCTACGCTCAGGAGAACCTGTGGGATCTGATTAAGAAACAGAGAGGCTTCTGGTCGGATGATGATGAGGAGGTTTGCTCCGCTCTCCGTAAAGGATTCATCGCCTGCCACCACGCCATGTGGAAGAAATTACCTGAATGGCCGAGAACAGCTACCGGTCTCCCGAGCACGTCCGGAACCACGGCCAGCGTGGTGGTGATCCGGCGTGACCGGCTGTACGTGGCTCATGTTGGGGATTCGGCCGTGGTTTTAGGGGTGCAGGATGATCCGGATGAAGAGACGATACGAGCCGAGGAGATCACACAGGATCATAAACCTGAACTTCCTAAAGAGAGGAAACGGATCGAGGGACTCGGGGGCAGtgTAATAAAGAAGTCTGGGGTTAATCGAGTGGTGTGGAAAAGACCCAGACTCACTCATAACGGCCCGGTGAGACGGAGCACCGTCATCGACCAGATCCCTTTCCTCGCTGTAGCTCGAGCTCTAGGTGATTTATGGAGTTATGATTTCTACAGTGGAGAGTTTGTAGTTTCACCAGAGCCCGATACTGCAGTCATTAAATTAGATCTGAAGAAGCATCGATACGTTATACTGGGCAGTGACGGTCTGTGGAACATGGTTTCACCACAGGAGGCCGTGTCTATGTGTCAGGAAACGGATAAAGCAAAGGCTAAGTGCCAGACGACAAAAGAAAACGTGTGCAGTGCTCACGAGCTGGTGAACCACGCCCTCCAGCGGTGGAGTCAGCGCATGCTCCGGGCTGATAACACCAGCGCTATAGTGGTCTGTTTGGAGCCGGTTGGAGCGTTTTCTGAGCCGCTGTCTCCGTATGAAGTCGTCTATAATCTAGAGGGAGCAAAGTGCTGCTCAGCTGCTGGATCCTCCATCAACACTCCACCCAACCAGGTCACTGAAGCAGATGAATCGTCTCCTTCCTGTGAACCGGAATCAGCCTCCGGTCAGGAGAACGGGGCCGGCGGGTCGAGCAGCAGTGAATCACTGGAGTCTCCGGTTCTAAACTCTCCACGTAAAGATCAGGGCAGTAGGAGCTCGAGTGAAGGCGGTCGCAGTAGCGGCGTGTCGACGGGGAAGCGAGCGCTGGAGGATCTGACGGGTCCTGCGGGGAAGAGACCTCGCCGGAGTCTTCCTCAGCCGTCTCACAGCTCGGCCTCTTCCTGCACGTCTCGCCGGCGGTACAGCGAGCGACCGGCGCTCCGACGCAGCGGCAAAACCCAGAAACAGCCTGATAAAGTGCAGGCTTTACTCCAGGAGCACGGAAACGCCACCGTCTGCGTCTGCTAACGTTCACCTGCTCCCACTCGCTCTCAGATTTGTGTTGGATTTGTTCACAGTCAAACTCAGATCTGTACACTTCTTCAGATAAGCTACTGGGATTAAAAAACGGGCACTAAAGCGACCAGGTCAAAATATAAACGTGATTTCATTTTAAGAGTAAAGCTGTTATGATGCAATAGTGTACTACTCTCCATTTAGCCTATCGTGACACACACCCGATGTGTTCCTCTGTTATGTGAAGTAGTGGGGTGGGGGATCTGTTACATGCTCCAACCTTCTGTTCGTCACCTTATCTATAACGGCTTCgtattttttaatcttgtaATGACTCCAATCAAGTACGCAGTACGAGCCTCGCATTAACCCGGGCTCGTACACTTTTACGTTGAATTCCTGCCCGTCTTCCGTTCGCCGCGGTGGAAAGACTGTGAGAAAAATTCAACCGACGACCGCATATCTTCTGAGAAGATATCGCTCTCTGCAACTGACCTGTACATATTCCAAAGAACGTTTTTGAGGAACGAAGTTACTTTGAGCTCTTCAATGGtctatgtatttttatacactTTGTTTTACAGAACAGAAGAGGAATGCACACAGTTTCTACCATTTCTACTAGTATCTTAACCTCCTGTCACTATGTATGATCTTACCTTTACCTCAGCATATAAGCATAAGAAATAATACACACCTTTTGGTCTtggtttttaaatatatatgggtTGAATCCAGTGTCTCGTTCACatgttaatatttgttttatattgggTTATTATTTTGTAAGTTGTTTTTTCTAACTGTGAGACATTCATGTGAAACTTAAGGTGCTGCTATGCTTAACCaggtaaataaaaacaaacttgATAAACTAAA

Function

symbol description
ppm1d Enables mitogen-activated protein kinase binding activity and protein serine/threonine phosphatase activity. Involved in negative regulation of gene expression, epigenetic and peptidyl-threonine dephosphorylation. Located in cytosol; nucleolus; and nucleoplasm. Implicated in breast cancer. Biomarker of pre-malignant neoplasm.

NR:

description
PREDICTED: protein phosphatase 1D

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K10147 PPM1D, WIP1; protein phosphatase 1D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258876.3 True 2727 mRNA 0.52 7 24690075 24699460

Neighbor

gene id symbol gene type direction distance location
brip1 NA coding downstream 2897 24567591 ~ 24687178 (-)
nlrx1 nlrx1 coding downstream 742697 23928815 ~ 23947378 (-)
LOC103036322 LOC108439975 coding downstream 762699 23909411 ~ 23927376 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 795000 23859753 ~ 23895075 (-)
c1qtnf5 c1qtnf5 coding downstream 914759 23767027 ~ 23775316 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 287606 24987066 ~ 25003911 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding upstream 307532 25006992 ~ 25038802 (-)
rnf169 rnf169 coding upstream 363227 25062687 ~ 25072518 (-)
LOC111193727 NA coding upstream 519749 25219209 ~ 25225815 (-)
LOC103046310 NA coding upstream 943886 25643346 ~ 25660463 (-)
G13390 NA non-coding downstream 25037 24664593 ~ 24665038 (-)
LOC111193726 NA non-coding downstream 203347 24477718 ~ 24486728 (-)
G13341 NA non-coding downstream 544839 24108652 ~ 24145236 (-)
G13331 NA non-coding downstream 618109 23992719 ~ 24071966 (-)
G13330 NA non-coding downstream 700608 23988935 ~ 23989467 (-)
G13393 ccdc9,LOC107743647 non-coding upstream 8026 24707486 ~ 24712985 (-)
G13419 NA non-coding upstream 76348 24775808 ~ 24809071 (-)
G13427 NA non-coding upstream 268832 24968292 ~ 24968831 (-)
G13444 NA non-coding upstream 292461 24991921 ~ 24993523 (-)
G13476 NA non-coding upstream 343780 25043240 ~ 25043516 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 781304 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 836777 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 1136105 23539257 ~ 23553970 (-)
G12767 NA other downstream 2695324 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 3714921 20975082 ~ 20975154 (-)
spcs2 spcs2,LOC107677086 other upstream 351500 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 774274 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 824327 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1025453 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 1302871 26002331 ~ 26016396 (-)

Expression


Co-expression Network