LOC103028197


Basic Information

Item Value
gene id LOC103028197
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32956131 ~ 32959840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260314.2
GAATAATGTGGGAAGTGACTATTTAAGAGAAGTGTTGCTGCAGTAAAGCAGAAAGCAGAAGTGAAGCTTCAGGATTTAAataaagagctttcagatcttcaCTGCTTCTCTACAGCATCGGCAGACCGGCCAACCAGAGACCAGCTCATTACCCTGAAACTCATCACTATAACTACATATATAACTATATTTCACCATCACAGGAAACAGAGCTCTTCATTAAAACCGACACTGGAAACATTATTCTGGTCAAATAAGAATAATGAAGGCTGTAGGTTGTCCCTCCTACCTACAGGGGGCAGTCCTCGCATCCTTCCTGACCTCCATCCTGGCCATACAGACGATTGTTGTGGATTTCCATTCCAGAAATCTGTCTGCGGTTCCTTCTGATCTCCCATCTTCAGCTGAAACTGTGGATCTTTCTCAGAACCGAATTCGGACCCTGAGGAAACTGGACTTCAGCAGAACCCCAGACCTCAAATCCCTCAACCTCTCCTGGAACATACTGGAGGACATCCACGTGGAGACATTTGCTTCAACTCCTGTCCTGGAAACGCTAGATCTGTCTCACAACAGACTCCAGAACCTGTCCAATCAACTGTATCTACTGCACACGCAAAGCCTACAGTACCTGGACCTTTCCTCCAACAGGTTCACAGTTATGAAGCTCGGGATTGAGTTCTCCAAACTCCTGAAGCTTCGGTGGCTCGGCCTGAGTGCTGGAACTATTCGGTTCGATGACTTTGAGAGCATTTCACATCTCTCGCTTCAGACTCTGTTCATCCAAGCCCAGAATCTGATTAACTATGAAGAAGGAAGTCTCGCTGGTGCCAAAGCAGAAAAGCTTACAATAGTACTGACGAACAAAGACCTCGACCATCCAATGATCCTCGATGCTCTGATGACCTTCAGGGAAGTGGAGCTTAGCAGCTTAAACAGTCCAGTGGACTTCCTCCGAGAACTGGTGATGTGCAGAGCGGCCATCCAAACAGTTCACCTGCATCTATCTGCCATTCAGAGCACCTGGAAGGTCATGACGTCCTTCTTCAACAGCGTCCTAATGTCCACAATCCGCCAGTTCAGTGTTTCCAACCTCACCCTAACCGAAATGAGGCACGGCAGCCAAGTGTTCCAGTCCAGCTCTCTGGATTCCTTCAGCGTCAGGCAGTCTTCGGTAAAGGTCTTCATCTTCAGTCAAAAGGATCTCTACGACTTCTTCATCAACATGCCTGCAAAGAACCTCACCTTGGCTTCGTCGCCAATAGTCCACATGACCTGCCCGGCGAAAGTCAGCAAGATCCAGATGCTTGACTTCTCCGATTGCGCCTTGTCTGAGAACGTCTTCTCCAAAGGTCCACAAGACGAATGCGACACCTTGACGAATCTGGAGACACTGATCTTGAAGGGCAATAACCTTAGACACTTAATGCCGTTAACATCAAGAGTCAAGCTTATGACCTCTTTAAGATATGTTGACTTTAGCCAGAACTCGCTGACCTATGACGAAGGTCAGGGAAGTTGTACTTGGCCTTTGGAAATCACCCACTTGGATTTGTCTTCCAATGGATTTGACCAGGTTGTGTTTAAATGCTTGCCAAGATCAGTCGTCAATCTCAACATCCAGAACAACCGGATCTTTGCAATTCCTGCAAATATTTCTGGCTTGGACTTCCTCAAAGTTCTGGATCTTACTTCAAATCGTCTGCTAGATCTCCCGGACTGTCTGGGGTATCCAAACTTGGAGCAGTTGTTTGTGCGTAGGAATTCCCTTCACGTCCCTTCTCTAGGTGCTCTTGAGACTTGTCCACATCTGCAAGTTCTGGACACAAGTCATAATCCCTACATCTGTACATGTCCTTTAAGAGGTTTCATCACACTCATCGATGATCAAGGCAAACTGGGTGGATCCAAACTGTGGAAAGGCCGCAGGATTACTTTGGATCGCTGGCCGAATTGGTATCGTTGCAGTTACCCAGAATCCTGGAGAAGAACAATGCTACAGAACTTCACCTTACCTGAGATCACTTGCAATCCTGGAGTTTTAGCGGCCACCATATTGGTTCCAGCCATTAGTTTAGTCATCATTATGGGAGTTCTATGCCGTCAGTTGGACATTCCTTGGTACGCAGGAATGATTTGGAAGTGGACTCGTGCAAAGCATCGTGCAAGAACTTCCCACCAACCACCAGAGGAATTGCAAGGCGTGTTCTTCCACGCTTTCATTTCCTACAGCCAGAGAAACTCTGACTGGGTAAAAGCTCAACTCCTGCCCAAGTTAGAGGGTGAAGATCCAGCCAAAGTCCAGAACAGTCTCCGAATCTGTCACCATGAGCGAGACTTCATCCCGGGGAAGACGATAGTGCAGAACATCCTTCGCTGCATAGAACAAAGCAGATGCTGCATCTTCGTGCTGTCCTCCCACTTCGTCCAGAGCGAGTGGTGTCACTATGAGCTTTACTTCGCTAGTCACCAGAGGCTAACCAGAGGTCTGGATAGCATCATCCTCATCCTGCTGGAGCCACTGCCTCCGTATCTCATCCCGTCCAAGTACCACCACCTGAAGGCCATGATGGCCAGACGCACCTACTTAGAATGGCCTCAGGACAAGACCAAGCAGAGGATGTTCTGGGCAAACCTGCGGGCCGTGCTGCAGGCAGATCTTCCGAGATCTTCCTCTCTTGAGGCGGGAAATCAAGAATAATCAATCagactggaataaaataaaaaataaagagtacagtattttttggactataaggagCAGCTGATTATAAGAGTccttaagcgacactagtaaggatgcctacaacaaagtgagcaagagtgttgccatgtttcccttctaataggg

Function

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05398 TLR1, CD281; toll-like receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260314.2 True 2851 mRNA 0.47 2 32956131 32959840

Neighbor

gene id symbol gene type direction distance location
LOC103029347 NA coding downstream 12538 32921025 ~ 32943593 (-)
LOC103029668 NA coding downstream 90794 32860683 ~ 32865337 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding downstream 97836 32834496 ~ 32858295 (-)
LOC103031569 NA coding downstream 205366 32734285 ~ 32750765 (-)
rest NA coding downstream 297481 32649063 ~ 32658650 (-)
LOC103027351 LOC108434533,LOC105893001 coding upstream 76009 33035849 ~ 33073381 (-)
kiaa0141 NA coding upstream 115293 33075133 ~ 33084176 (-)
nudt6 nudt6,LOC107690594 coding upstream 133025 33092865 ~ 33101606 (-)
ankrd50 ankrd50 coding upstream 341393 33301233 ~ 33348173 (-)
LOC103022214 NA coding upstream 939018 33898858 ~ 33909077 (-)
G15276 NA non-coding downstream 42565 32912229 ~ 32913566 (-)
G15273 NA non-coding downstream 44002 32897427 ~ 32912129 (-)
G15272 NA non-coding downstream 47996 32906029 ~ 32908135 (-)
G15249 NA non-coding downstream 160301 32795378 ~ 32795830 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding downstream 161789 32784189 ~ 32794342 (-)
G15289 NA non-coding upstream 11697 32971537 ~ 32983360 (-)
G15300 NA non-coding upstream 53530 33013370 ~ 33023936 (-)
G15302 NA non-coding upstream 56425 33016265 ~ 33018552 (-)
G15303 NA non-coding upstream 59272 33019112 ~ 33040395 (-)
G15290 NA non-coding upstream 73330 33033170 ~ 33066563 (-)
hopx hopx,LOC107552340 other downstream 135327 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 796168 32122222 ~ 32159963 (-)
G14839 NA other downstream 1900628 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 2032044 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 2032882 30914910 ~ 30923249 (-)
G15497 NA other upstream 1174752 34134592 ~ 34136732 (-)
evc2 NA other upstream 1191983 34151823 ~ 34172017 (-)
G15498 NA other upstream 1281486 34241326 ~ 34242318 (-)

Expression


Co-expression Network