LOC103029668


Basic Information

Item Value
gene id LOC103029668
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32860683 ~ 32865337 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260318.3
aagaaagagggaggaggGTGGGAAGGATGGAGGGAGGGGACACTTCTCTTTCAGTGGGAAGAAAAGAGGAAGGTGGAGGACAAGTGCTgctcagagagagacagatcagAACCCAGACAGAAGCTCTGGAAGCTCTTCGGGTCGAGCTGGAGGATCAGAACCACGTGAAGCTCGTTTCTACAGATTCAAGATGCTTCTCATGTCAAATCTCTTCCTCTTCCTGATGTCCTCCTTGGTGGGCGTCCTCTGGGCAGCTTCGGTGAGCCCCTCGGCGTCCCAACCTCCGGTGACAAAAACGCGTGTCCTCTACGTTGAGGTTGAGGACGACTACGATGAAAAAACCTCTGAGCCGCCTGTTAAACCTGGCGTCCCCAGGTTAACCACCGCACAGTTCTCGCCGCAGGAGTGCGAGTACGACCCCTGCGTGGTACCAAAGGTTCCCTGCGCCGTGCTCTCGGCCCAGACCAAGTGCTACTGTCCTGGGCTCACCGGCCCGGACCAGCTCCCGGAACCTCCAGAGCTGCGTGAGCTCCGGCAGGGGGAGTCTGGAGCGGTGGAGGTCCACTGGTGCGCCCCGCTGTCCACTGTTACGCACTATAAGCTGGTGACGGAGGACGGGCACGGTCTCGGCTCCATTTTCGGGGAGTTATCTCGGAACGGGACGCTGCAGGGACTGAAGACCGGGTCCCGGGTGTGCGTGGTCGCTGTTAACGACGCCGGCTTCAGCGTGGAGACCGAGAAGTCCTGCTCTCGCTTTGAGCCTCCGCAGCCCAGCCAGGCTGCCCTCAGGGCCGGGGTCATCGCTGGGTGCGTCGGCTTCCTGGTACTGCTCTTATTGGCTGCGCTGTTACTATGGAAACGGAAGTCTTGCGGGAAGAGCACGACTATGGATGGCGAGGGGCTGAGGAATCCGTCATACAGCAACAGCGGAACGCTCTGATTGGGCGGAAGAAAGGGACAGCAAGGACGTCTTACACTGATTGGACGGTGAATGAAGTGCGAGGTGCGAGGTGGTTAAAGGTTAAGTTAAAGGGAATGCTAACGACGAGATAGCGTGGAATACTAAACAGTAGAACAGAGCACTACGAAGAAACACTGACACACTACAGGCCAGAAACTGTTCTTCTCTAACCTTTTTTAAACTCTCTTAAACTCCACCGGACCACCAGAAGATCCAGGGGATTTATTTGTTTCTTAATGATATAAATCTGGAACAATCAGagattttgcattattttgcatGTAGTTACTGAATAGTGATCCTTACCCATAGCATGTTCACGCTAGCAGGCGACAAATcacttaaaggggcactaataaaccccctgattttatctcaaattttaaaaatgctaaaaaatatgAGAGGAGCAGTTTGGgaagggcactgggtgatgtatgggtttagaggaggggcaagagggagagctgattggctaagctgcagcagcagtgtgcctctgatagcggtgagatgcATATGATTGGATGTCATCAGCAGGGGGAGGGCGGTATTATCGATTGACGGAAACAtaatcctcgcctatagcacagctgaacctgagGGGGCGCCGCAGAGGCGGAAATAAAggtttaaaggttaggaaatgtttataaaaatttaagcaggacttaaattatgttttagggtttagtggctgaTCTATTTCACTCTAAACCCACTGTATTACACAGTCTAGACTGAAGAATTTCTGATGGTGATTCATAAATTAGCTGCAATTTAGTCTCAAACTCACCTTAATCCACGGCTAAGACCCGCCCCTCATGCTACACACCTGACACCTGAGCTCTCAGAGTGATCACAGGTAAATACACAActgctgctggagtttatttAAACACTTCAATTTTCTGTTATTATATTTCGTCATTATCAaatattggaaaaaagtaacaggaatcgacttaaattctgcattttgaaattaaaaacagacaattataaaaatctaaaggtttggaggacatgaactgatTGATCTGTATGAatgaaaatatagattttataagtTAAAGGTTCAGAAAAGCACAAATGTTATGAATTTTATTCATCATTTGAAAGttaaaaagcatatttttaaaatatattttctgtttctatttCTGCAATTACAATTTGGATGTTCTGTTacatttcttattaaatataacattttttaatgtaatgcttaaatagaaatcctcaaaatTAGGGGGCATAATATCAGATAGAAAATAGCCAAAAATGCTGccctgttattattattaaaaagaacctcctacaataacaataaatataaatatcaggTTTTTGATTATTACAAATTTACTGTCTATAATCTCCTTTATGGTCTGTTGTGGAACACTACTCTGTATGTTCTATaagttattatataataataatactaatgatTTAGTTGTTGATTGTGTTTAATTGTTGGGAGCCTGGAGCTTCTGTTAGGCTTTATAGAGAATCAGCTGTATCAGAATCAGAGTCGCTGCTGGATGGTATGAAAGTTGTGTTCATGTATAGAAATGTtcatatttgttgtttttttccacaactaatgtttttttttaaataaatttgtaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K24493 LRRN4; leucine-rich repeat neuronal protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260318.3 True 2604 mRNA 0.44 2 32860683 32865337

Neighbor

gene id symbol gene type direction distance location
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding downstream 2388 32834496 ~ 32858295 (-)
LOC103031569 NA coding downstream 109918 32734285 ~ 32750765 (-)
rest NA coding downstream 202033 32649063 ~ 32658650 (-)
polr2b polr2b,LOC102791558 coding downstream 221765 32622181 ~ 32638918 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding downstream 687743 32160819 ~ 32172940 (-)
LOC103029347 NA coding upstream 55688 32921025 ~ 32943593 (-)
LOC103028197 NA coding upstream 90794 32956131 ~ 32959840 (-)
LOC103027351 LOC108434533,LOC105893001 coding upstream 170512 33035849 ~ 33073381 (-)
kiaa0141 NA coding upstream 209796 33075133 ~ 33084176 (-)
nudt6 nudt6,LOC107690594 coding upstream 227528 33092865 ~ 33101606 (-)
G15249 NA non-coding downstream 64853 32795378 ~ 32795830 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding downstream 66341 32784189 ~ 32794342 (-)
LOC103032939 NA non-coding downstream 94118 32766097 ~ 32766565 (-)
G15233 NA non-coding downstream 143785 32716630 ~ 32716898 (-)
G15217 NA non-coding downstream 161715 32612881 ~ 32698968 (-)
G15273 NA non-coding upstream 32090 32897427 ~ 32912129 (-)
G15272 NA non-coding upstream 40692 32906029 ~ 32908135 (-)
G15276 NA non-coding upstream 46892 32912229 ~ 32913566 (-)
G15289 NA non-coding upstream 106200 32971537 ~ 32983360 (-)
G15300 NA non-coding upstream 148033 33013370 ~ 33023936 (-)
hopx hopx,LOC107552340 other downstream 39879 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 700720 32122222 ~ 32159963 (-)
G14839 NA other downstream 1805180 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1936596 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1937434 30914910 ~ 30923249 (-)
G15497 NA other upstream 1269255 34134592 ~ 34136732 (-)
evc2 NA other upstream 1286486 34151823 ~ 34172017 (-)
G15498 NA other upstream 1375989 34241326 ~ 34242318 (-)

Expression


Co-expression Network