CI01000009_09884586_09891558 (PLA1A)


Basic Information

Item Value
gene id CI01000009_09884586_09891558
gene name PLA1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9884580 ~ 9891558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_09884586_09891558.mRNA
ATGGCTTGGAAATGGATCAAAGCTTTTGTTTATCTGTCATTGTGTGTCACCTCTGCTGCGGAATTTCATGCGTACAACTTTACAGGTGATGAGGAACTATCCCAAACCAAGTGTGCTGACTTCAACAACACCACCTGGATGGAATACAGACAGGCCACCAAGCTCCAGGTTCAGTACCTTCTCGTTACACGAAAGAATGCAGACTGTGCCAGCCTTTTCACGCAGGACTGCCTCAACCACACCCAGAAACACACGGCTTACTTCAACTCATCACGCCCCACTAAAGTCATTGTTCATGGATACAGAGCCTTGGGCAGCAAACCTTCCTGGGTGAGTGGCTTAGCCCAGGCTCTATTGCGGGAAGGAGACGTGAACGTTCTGGTGGTGGACTGGGTCTATGGAGCCTCCTTTGCTTATAACTTGGTGGTAGAGAACTACAAGGAGGTGGCTGTGCAGATATCAGTGCTTATCAATCAGCTTACGAAATATGGAAGCACGCTGGAATCTTTCCATTTCATCGGTGTGAGTCTTGGAGCACATGTGTGTGGATTTGTGGGGACCCTATTTGAAGGCAAGCTGGGTCGAATCACAGGTCTGGACCCAGCAGGACCAATGTTTAAGAGGGCTGATCCATATGACCGTCTGGATTCATCTGATGCCTTGTTTGTTGAGGCCATCCACACTGACTCTGACTACTTTGGTATATCCATTCCTGTCGGACATGTGGACTTCTTCTTAAATGGTGGAATGGACCAAGCCGGTTGCGCGCGCTCAAGGTTTGCGTCAATGTATGGCTATGTCATATGTGACCACATGAGGGCACTGCATGTCTACATGAGCGCCCTGAATGGCACCTGCCCACTTATTGGTTTCCCCTGCTCCAGTTATGAGGAATTCTTGGCAGGAAAATGCATCACCTGCCAAGGCCCCTTCAATGGCACATGCCCACAAATAGGCTTGTTAAAGAACAGTGGGATAACAGTGAGTCCCCTGCCAAATCAAGAGAAGGTGTATCTCCTGACCACCGCTACGGCTCCGTATTGTGCACATCACATCCTTGTGGAATTGAGGGTTTCCCGATTAGACAAGACTGCTGAGGTTCAGCTTACCCTGATCTCTACAGGACATCCTCAGACAGAGCTAAAACTCAAACTAAATACGGATGAAACTGGGTATAAAAAGGTGGCTGCACACCCGGAGCGACTGTGTAATATTGACTCAGTGCAGCTGAAAAACACAGGAGCACGATTCTACAGACAAGGAGACATTCATTTTGAGTACATATGCATCTCTGAAGTCCCTCACACCAGAGGGTTGGATCCATTATGTGTGAAGAACATTAATATTGGACGGGGAGTACCATGGTCACATGACTTTGTACAGGTGTGCTAAATTAAA

Function

symbol description
pla1a Predicted to enable lipase activity. Predicted to be involved in lipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in diencephalon; hindbrain; and midbrain. Orthologous to human PLA1A (phospholipase A1 member A).

GO:

id name namespace
GO:0010296 prenylcysteine methylesterase activity molecular_function

KEGG:

id description
K13618 PLA1A; phosphatidylserine sn-1 acylhydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_09884586_09891558.mRNA True 1398 mRNA 0.48 11 9884580 9891558

Neighbor

gene id symbol gene type direction distance location
CI01000009_09866875_09870401 NA coding downstream 14116 9866565 ~ 9870464 (-)
CI01000009_09855740_09859027 NA coding downstream 25553 9855740 ~ 9859027 (-)
CI01000009_09851362_09853119 NA coding downstream 31461 9849992 ~ 9853119 (-)
CI01000009_09836011_09846297 LATS2 coding downstream 35950 9834751 ~ 9848630 (-)
CI01000009_09817498_09826525 NA coding downstream 58055 9817247 ~ 9826525 (-)
CI01000009_09895304_09897877 HSD3B1 coding upstream 3598 9895156 ~ 9898004 (-)
CI01000009_09900049_09906784 KLH13 coding upstream 8151 9899709 ~ 9906784 (-)
CI01000009_09908895_09911939 HAO2, HAOX2 coding upstream 17025 9908583 ~ 9912038 (-)
CI01000009_10089124_10102162 WDR3 coding upstream 196379 10087937 ~ 10102162 (-)
CI01000009_10137314_10138474 MAN1A2, FAM46C coding upstream 245533 10137091 ~ 10139525 (-)
G57042 NA non-coding downstream 8863 9873338 ~ 9875717 (-)
G57180 NA non-coding downstream 112072 9771719 ~ 9772508 (-)
G57179 NA non-coding downstream 115448 9766774 ~ 9769132 (-)
G57176 NA non-coding downstream 130471 9753748 ~ 9754109 (-)
G57114 NA non-coding downstream 314921 9557639 ~ 9569659 (-)
G57189 NA non-coding upstream 23630 9915188 ~ 9915459 (-)
G57210 NA non-coding upstream 72772 9964330 ~ 9964556 (-)
G57219 NA non-coding upstream 94515 9986073 ~ 9986491 (-)
G57226 NA non-coding upstream 109603 10001161 ~ 10003496 (-)
CI01000009_08858198_08860555 NA other downstream 1024017 8856310 ~ 8860563 (-)
G55814 NA other downstream 1456568 8425821 ~ 8428012 (-)
G53515 NA other downstream 4379332 5502395 ~ 5505248 (-)
G52828 NA other downstream 5653111 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 6622623 3261038 ~ 3262843 (-)
G59097 NA other upstream 2396659 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 4083830 13975099 ~ 13978614 (-)
G59490 NA other upstream 4142006 14033564 ~ 14037873 (-)
G59811 NA other upstream 4970839 14862397 ~ 14887464 (-)
G59941 NA other upstream 5240546 15132104 ~ 15132503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037078 pla1a non-coding NC_007120.7 CM002893.2 21214940 ~ 21226132 (+)