LOC103041420


Basic Information

Item Value
gene id LOC103041420
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19217372 ~ 19230909 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260526.3
cGGGGcgtttcctcctcctcctcctcctcctctgctgcaggtgctgctgctgcttccctGCAGAGCTCCATCTGCCTGGTCCTCTGAGCCCCCCAGCACTGCACTGCGAGACCACCAGCCCAGCAGAGCTCACCACTCGTTCAGCTGCAGCTTTAACCCGAGGAGGACCAGGAGCTCATCAGTAGCAGcatcacctcctcctcctccgcagcagcagcagcatcagtatCAGCAGCATCCGTAGGAACCCACCCAGTGATTCACTGTGACtgattatctctctctttatctatctgtctctctttttcttcttatcgttctctctctcagtgtctctctacCCCCTGTCTTTCtccccatctctccatccatctctctgcaGTCATGGCGTGGCCGTGCATCGCGCGCGCCTGCTGCATGAGCCGGCTGTGGAGCGAGCTGGACAAGGCGGACATCGCGGTGCCGCTGGTCTTCTCCTCCAGCTACTCGGAGGTGGCGGACGGGCAGCAGGCCGGCGGGGGTGCGGCGGAGGCTCGGCGGGACGGGGCGGCTCCGGGCGTCTCCTCCAGCGTCATGCACGAGGACTTCAGGGCCTGGAGGGTCCGGCCCGAGAAGAGCTGCAAGCCCAAGCACGAGTACAGACCCTCCGGAGCCCCCTTCACAGACCAGACCCAGtaccagaaggactacaagccGTGGCCCATCCCCAGGAAAGGAGACCACCCCTGGATCCCCAAAGGAGCGAATCCCCCCGGCAAACGCGAGCCCGAGGAGCGCGAGACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGGGTGCAGGAGAAGGAGAGCAAGGAGCGGAGGAAGAAGAGCAGGAAGGAGAAGGAGCCCGCGAGCCTGGAGGAGAAGAGTGTGAAGCAGCAGGTGAAGGAGGAGGTGGTGAAGAAGCAGCAGGTGAAGGAGGAGGtggtgaagaaggaggaggagggcgAGGCTAAAGCCAGGTCTGCCGTAGATGCTCTGAACAGGCAGATTAAACAGGAAGTGACGTCTGGAAGCTCCTACAGgacgGAGTTCAAAGCATACTCCAATGTTAAGCCAGTAAAACCTATTAAAGCCAAATCCCAGTATAAACTGCTGGTAGAGGAGAAGGCCAGTCTGGAGACGAGCTACAGTGCCACCTTTAAGGGCGAACAGGTGAAGCCACAGCCCACAGACAATAAAGTAATGGAGCGGCGGAGGATACGCAGCCTTTACAGTGAGCCCAGCAGCAAAGAACCCATCAAGGTGGAAAGGTCCAGCGCATCCCACTCAAGACCAAAAAAGACGACAAGCCATAGCAAAACAGCGAGTAAGGCTAAAGCAAAGCAAATCACTGCTACCCAACCTGCCAAGAAGAAGACCTCAGTGAGCAACCTGGAATTAAACCCAGAGGGAGGCGTCACCAAGAAGAGTAAAGAAATCATCAACAGACTGGCTGAGGGGAAGGATTAAGtgcactttgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_007260527.3
cGGGGcgtttcctcctcctcctcctcctcctctgctgcaggtgctgctgctgcttccctGCAGAGCTCCATCTGCCTGGTCCTCTGAGCCCCCCAGCACTGCACTGCGAGACCACCAGCCCAGCAGAGCTCACCACTCGTTCAGCTGCAGCTTTAACCCGAGGAGGACCAGGAGCTCATCAGTAGCAGcatcacctcctcctcctccgcagcagcagcagcatcagtatCAGCAGCATCCGTAGGAACCCACCCAGTGATTCACTGTGACtgattatctctctctttatctatctgtctctctttttcttcttatcgttctctctctcagtgtctctctacCCCCTGTCTTTCtccccatctctccatccatctctctgcaGTCATGGCGTGGCCGTGCATCGCGCGCGCCTGCTGCATGAGCCGGCTGTGGAGCGAGCTGGACAAGGCGGACATCGCGGTGCCGCTGGTCTTCTCCTCCAGCTACTCGGAGGTGGCGGACGGGCAGCAGGCCGGCGGGGGTGCGGCGGAGGCTCGGCGGGACGGGGCGGCTCCGGGCGTCTCCTCCAGCGTCATGCACGAGGACTTCAGGGCCTGGAGGGTCCGGCCCGAGAAGAGCTGCAAGCCCAAGCACGAGTACAGACCCTCCGGAGCCCCCTTCACAGACCAGACCCAGtaccagaaggactacaagccGTGGCCCATCCCCAGGAAAGGAGACCACCCCTGGATCCCCAAAGGAGCGAATCCCCCCGGCAAACGCGAGCCCGAGGAGCGCGAGACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGGGTGCAGGAGAAGGAGAGCAAGGAGCGGAGGAAGAAGAGCAGGAAGGAGAAGGAGCCCGCGAGCCTGGAGGAGAAGAGTGTGAAGCAGCAGGTGAAGGAGGAGGtggtgaagaaggaggaggagggcgAGGCTAAAGCCAGGTCTGCCGTAGATGCTCTGAACAGGCAGATTAAACAGGAAGTGACGTCTGGAAGCTCCTACAGgacgGAGTTCAAAGCATACTCCAATGTTAAGCCAGTAAAACCTATTAAAGCCAAATCCCAGTATAAACTGCTGGTAGAGGAGAAGGCCAGTCTGGAGACGAGCTACAGTGCCACCTTTAAGGGCGAACAGGTGAAGCCACAGCCCACAGACAATAAAGTAATGGAGCGGCGGAGGATACGCAGCCTTTACAGTGAGCCCAGCAGCAAAGAACCCATCAAGGTGGAAAGGTCCAGCGCATCCCACTCAAGACCAAAAAAGACGACAAGCCATAGCAAAACAGCGAGTAAGGCTAAAGCAAAGCAAATCACTGCTACCCAACCTGCCAAGAAGAAGACCTCAGTGAGCAACCTGGAATTAAACCCAGAGGGAGGCGTCACCAAGAAGAGTAAAGAAATCATCAACAGACTGGCTGAGGGGAAGGATTAAGtgcactttgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_015608641.2
cGGGGcgtttcctcctcctcctcctcctcctctgctgcaggtgctgctgctgcttccctGCAGAGCTCCATCTGCCTGGTCCTCTGAGCCCCCCAGCACTGCACTGCGAGACCACCAGCCCAGCAGAGCTCACCACTCGTTCAGCTGCAGCTTTAACCCGAGGAGGACCAGGAGCTCATCAGTAGCAGcatcacctcctcctcctccgcagcagcagcagcatcagtatCAGCAGCATCCGTAGGAACCCACCCAGTGATTCACTGTGACtgattatctctctctttatctatctgtctctctttttcttcttatcgttctctctctcagtgtctctctacCCCCTGTCTTTCtccccatctctccatccatctctctgcaGTCATGGCGTGGCCGTGCATCGCGCGCGCCTGCTGCATGAGCCGGCTGTGGAGCGAGCTGGACAAGGCGGACATCGCGGTGCCGCTGGTCTTCTCCTCCAGCTACTCGGAGGTGGCGGACGGGCAGCAGGCCGGCGGGGGTGCGGCGGAGGCTCGGCGGGACGGGGCGGCTCCGGGCGTCTCCTCCAGCGTCATGCACGAGGACTTCAGGGCCTGGAGGGTCCGGCCCGAGAAGAGCTGCAAGCCCAAGCACGAGTACAGACCCTCCGGAGCCCCCTTCACAGACCAGACCCAGtaccagaaggactacaagccGTGGCCCATCCCCAGGAAAGGAGACCACCCCTGGATCCCCAAAGGAGCGAATCCCCCCGGCAAACGCGAGCCCGAGGAGCGCGAGACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGGGTGCAGGAGAAGGAGAGCAAGGAGCGGAGGAAGAAGAGCAGGAAGGAGAAGGAGCCCGCGAGCCTGGAGGAGAAGAGTGTGAAGCAGCAGGTGAAGGAGGAGGtggtgaagaaggaggaggagggcgAGGCTAAAGCCAGGTCTGCCGTAGATGCTCTGAACAGGCAGATTAAACAGGAAGTGACGTCTGGAAGCTCCTACAGgacgGAGTTCAAAGCATACTCCAATGTTAAGCCAGTAAAACCTATTAAAGCCAAATCCCAGTATAAACTGCTGGTAGAGGAGAAGGCCAGTCTGGAGACGAGCTACAGTGCCACCTTTAAGGGCGAACAGGTGAAGCCACAGCCCACAGACAATAAAGTAATGGAGCGGCGGAGGATACGCAGCCTTTACAGTGAGCCCAGCAGCAAAGAACCCATCAAGGTGGAAAGGTCCAGCGCATCCCACTCAAGACCAAAAAAGACGACAAGCCATAGCAAAACAGCGAGTAAGGCTAAAGCAAAGCAAATCACTGCTACCCAACCTGCCAAGAAGAAGACCTCAGTGAGCAACCTGGAATTAAACCCAGAGGGAGGCGTCACCAAGAAGAGTAAAGAAATCATCAACAGACTGGCTGAGGGGAAGGATTAAGtgcactttgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_015608642.2
cGGGGcgtttcctcctcctcctcctcctcctctgctgcaggtgctgctgctgcttccctGCAGAGCTCCATCTGCCTGGTCCTCTGAGCCCCCCAGCACTGCACTGCGAGACCACCAGCCCAGCAGAGCTCACCACTCGTTCAGCTGCAGCTTTAACCCGAGGAGGACCAGGAGCTCATCAGTAGCAGcatcacctcctcctcctccgcagcagcagcagcatcagtatCAGCAGCATCCGTAGGAACCCACCCAGTGATTCACTGTGACtgattatctctctctttatctatctgtctctctttttcttcttatcgttctctctctcagtgtctctctacCCCCTGTCTTTCtccccatctctccatccatctctctgcaGTCATGGCGTGGCCGTGCATCGCGCGCGCCTGCTGCATGAGCCGGCTGTGGAGCGAGCTGGACAAGGCGGACATCGCGGTGCCGCTGGTCTTCTCCTCCAGCTACTCGGAGGTGGCGGACGGGCAGCAGGCCGGCGGGGGTGCGGCGGAGGCTCGGCGGGACGGGGCGGCTCCGGGCGTCTCCTCCAGCGTCATGCACGAGGACTTCAGGGCCTGGAGGGTCCGGCCCGAGAAGAGCTGCAAGCCCAAGCACGAGTACAGACCCTCCGGAGCCCCCTTCACAGACCAGACCCAGtaccagaaggactacaagccGTGGCCCATCCCCAGGAAAGGAGACCACCCCTGGATCCCCAAAGGAGCGAATCCCCCCGGCAAACGCGAGCCCGAGGAGCGCGAGACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGGGTGCAGGAGAAGGAGAGCAAGGAGCGGAGGAAGAAGAGCAGGAAGGAGAAGGAGCCCGCGAGCCTGGAGGAGAAGAGTGTGAAGCAGCAGGTGAAGGAGGAGGTGGTGAAGAAGCAGCAGGTGAAGGAGGAGGtggtgaagaaggaggaggagggcgAGGCTAAAGCCAGGTCTGCCGTAGATGCTCTGAACAGGCAGATTAAACAGGAAGTGACGTCTGGAAGCTCCTACAGgacgGAGTTCAAAGCATACTCCAATGTTAAGCCAGTAAAACCTATTAAAGCCAAATCCCAGTATAAACTGCTGGTAGAGGAGAAGGCCAGTCTGGAGACGAGCTACAGTGCCACCTTTAAGGGCGAACAGGTGAAGCCACAGCCCACAGACAATAAAGTAATGGAGCGGCGGAGGATACGCAGCCTTTACAGTGAGCCCAGCAGCAAAGAACCCATCAAGGACTGTTCAGACAGTGACAGCAGTTCTGTTCTAAGTCTACATTAGTcagGTGGAAAGGTCCAGCGCATCCCACTCAAGACCAAAAAAGACGACAAGCCATAGCAAAACAGCGAGTAAGGCTAAAGCAAAG
>XM_022674575.1
cGGGGcgtttcctcctcctcctcctcctcctctgctgcaggtgctgctgctgcttccctGCAGAGCTCCATCTGCCTGGTCCTCTGAGCCCCCCAGCACTGCACTGCGAGACCACCAGCCCAGCAGAGCTCACCACTCGTTCAGCTGCAGCTTTAACCCGAGGAGGACCAGGAGCTCATCAGTAGCAGcatcacctcctcctcctccgcagcagcagcagcatcagtatCAGCAGCATCCGTAGGAACCCACCCAGTGATTCACTTCATGGCGTGGCCGTGCATCGCGCGCGCCTGCTGCATGAGCCGGCTGTGGAGCGAGCTGGACAAGGCGGACATCGCGGTGCCGCTGGTCTTCTCCTCCAGCTACTCGGAGGTGGCGGACGGGCAGCAGGCCGGCGGGGGTGCGGCGGAGGCTCGGCGGGACGGGGCGGCTCCGGGCGTCTCCTCCAGCGTCATGCACGAGGACTTCAGGGCCTGGAGGGTCCGGCCCGAGAAGAGCTGCAAGCCCAAGCACGAGTACAGACCCTCCGGAGCCCCCTTCACAGACCAGACCCAGtaccagaaggactacaagccGTGGCCCATCCCCAGGAAAGGAGACCACCCCTGGATCCCCAAAGGAGCGAATCCCCCCGGCAAACGCGAGCCCGAGGAGCGCGAGACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGGGTGCAGGAGAAGGAGAGCAAGGAGCGGAGGAAGAAGAGCAGGAAGGAGAAGGAGCCCGCGAGCCTGGAGGAGAAGAGTGTGAAGCAGCAGGTGAAGGAGGAGGTGGTGAAGAAGCAGCAGGTGAAGGAGGAGGtggtgaagaaggaggaggagggcgAGGCTAAAGCCAGGTCTGCCGTAGATGCTCTGAACAGGCAGATTAAACAGGAAGTGACGTCTGGAAGCTCCTACAGgacgGAGTTCAAAGCATACTCCAATGTTAAGCCAGTAAAACCTATTAAAGCCAAATCCCAGTATAAACTGCTGGTAGAGGAGAAGGCCAGTCTGGAGACGAGCTACAGTGCCACCTTTAAGGGCGAACAGGTGAAGCCACAGCCCACAGACAATAAAGTAATGGAGCGGCGGAGGATACGCAGCCTTTACAGTGAGCCCAGCAGCAAAGAACCCATCAAGGTGGAAAGGTCCAGCGCATCCCACTCAAGACCAAAAAAGACGACAAGCCATAGCAAAACAGCGAGTAAGGCTAAAGCAAAGCAAATCACTGCTACCCAACCTGCCAAGAAGAAGACCTCAGTGAGCAACCTGGAATTAAACCCAGAGGGAGGCGTCACCAAGAAGAGTAAAGAAATCATCAACAGACTGGCTGAGGGGAAGGATTAAGtgcactttgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260526.3 True 1507 mRNA 0.58 3 19217372 19230909
XM_007260527.3 False 1477 mRNA 0.58 4 19217372 19230909
XM_015608641.2 False 1477 mRNA 0.58 4 19217372 19230909
XM_015608642.2 False 1396 mRNA 0.58 4 19217532 19230909
XM_022674575.1 False 1390 mRNA 0.59 4 19217372 19230909

Neighbor

gene id symbol gene type direction distance location
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding downstream 10024 19191856 ~ 19207348 (-)
LOC103023129 phldb1,LOC108277892 coding downstream 160635 18888019 ~ 19056737 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding downstream 379149 18833424 ~ 18838223 (-)
pou2af1 NA coding downstream 454619 18735401 ~ 18762753 (-)
LOC103040343 LOC108443348 coding downstream 584725 18614197 ~ 18632647 (-)
LOC103042129 thap12,LOC108278397 coding upstream 2434 19233343 ~ 19237928 (-)
trnap-cgg NA coding upstream 7997 19238906 ~ 19238977 (-)
LOC103042959 LOC108435292 coding upstream 54070 19284979 ~ 19312628 (-)
LOC103024090 NA coding upstream 128876 19359785 ~ 19370144 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding upstream 152155 19383064 ~ 19397085 (-)
G11720 NA non-coding downstream 96213 19117942 ~ 19121159 (-)
G11712 NA non-coding downstream 123328 19091508 ~ 19094044 (-)
G11608 NA non-coding downstream 285211 18879117 ~ 18932161 (-)
G11605 NA non-coding downstream 315125 18884146 ~ 18902247 (-)
G11619 NA non-coding downstream 392449 18824703 ~ 18824923 (-)
G11742 NA non-coding upstream 35529 19266438 ~ 19266734 (-)
G11747 NA non-coding upstream 144322 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 160394 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 222484 19453393 ~ 19475044 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding upstream 300480 19531389 ~ 19532500 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 105800 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 2863538 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3212653 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3314939 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3930637 15285676 ~ 15286735 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 10847 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 555072 19785981 ~ 19802323 (-)
G11917 NA other upstream 767531 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1744173 20975082 ~ 20975154 (-)
G12767 NA other upstream 2762898 21993807 ~ 21994751 (-)

Expression


Co-expression Network