LOC103042129 (thap12,LOC108278397)


Basic Information

Item Value
gene id LOC103042129
gene name thap12,LOC108278397
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19233343 ~ 19237928 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260529.3
AGTTCAGACGCTTCTTCTGCTTAGCTTGGCGCTTTGTTAGCTAGCCTGGCTAACGTTAGCAATGTAGTTAGCTTAGCAAGAACAACAAGCCCtatagttagctagcgttaactAAGTTAACCCACAGTTTATTCCCCCGTTTACTCACTCTCAGCGTGTTTATACTAATTTACACACAATGCCCAATTTCTGCGCGGCCCCGAACTGCACCAGAAAGAGCACCCAGTCCGACCTGGCTTTCTTTCGGTTTCCTAGAGACCCGGAGAGATGTAGGCTGTGGGTGGAGAACTGCCGTCGGGCAGACCTGGAAGAGAAAACTCCTGACCAGCTAAACAAGCACTACCGACTCTGTGCCAAGCACTTCGAACCAGCGATGATCTGTAAAACTaGCCCTTACAGGACTGTATTAAGGGACACTGCTATTCCTAcaatctttgatttaaccagTCACCTCAGCAATCCGCACAGCAGACATCGCAAACGGATCAAAGTGTTGacagATGAAGAGgtccagaaaataaaagagaggaGATTGGAGTCTTCACTTGAACACCTGCTttccaaaaaggaaaaaaatgacagTCAGGACGGCACAGAGACAAACGATGATGTACCTCAGTTGAGTCCACATCAAAAAGAGCTAAGAGATTTCTTAAGATCACTGTTTGAAGTGATTGTTTTAATAGGAAAACAAAACTTTCCATTGAGTTTCCAGTCGAAACAGGAGCAGGAGAGTCACCCCGTCTTCATGAGCACCTTTCATACTCTGATGGAAAATCGTATAAATGCAGGGGATGAATTCCTGAGAGGGAAATTTGAATTAGCATCCATTAATGAGGAGTACTGTCCAGCCACACAGCAGAGGCAGCTCCTGGACATCTGTGAAAGGTGTGTTCGGGAAGAACTCCTCCAAGAGGTAAGAGACAGTCGCTTTTTTTCGCTGGTGACTGGGGAGCTGGTGGAGTTTCCTGAGGGCCAGCACATCCCTGTGTTTTTGCGCTTTGTGGACCAAACCAACACACTTCGGGAGGAGTTTATAGAGTTCCTCTCGTTTGATGGAGAGGAGCTTTCTGTGGCCGATAAATTGGAATCTCACGTCACTAAGCAGTGGGGATTGAGTATGGAGCACTGTAGAGGCCAAGCCCACGCTGCCTCTGGGGTGCTTGGCAGTAGGATGAAGGCTGTGGCTACACAGCTCATGGAGAAATATCCTCTAGCTATAAACACCCCTTGCTCTACTTGTTCACTAAACGTTCACCTGGCCAACAGTATTCCCTTGACTGGAGTTCAGGTGGTAATGTCCGTTCTGAGAAAGGCTGATGCGTTTTTTAAGGCTTCTCCACTCCTGCAGGCAGAGCTGGACAGTGCCATCTCCATTTACTGTCACAACAACGTAGAGAAAGGGAACTATCTAAAAGAGAGCTGTCGTGAAACGTGGACGGATCttcataatgtgtttgagatGGCTGTAGATTTGTTGGAGCCGCTATTGCTCTGCATGGACAGCGTACACGACAATGAGGACTTGAAGTGGAACGACCAAATCACAAGTGATGCTTACTCAATCTCAGAAGCTTTGGCAGACTTTGAGTTTATCGTCACTTTGATTGTGCTGAAGAACGCACTGTCTTTCACCAGAGCGTTTGGCAAAAACCTGCAAGGAGAGACGCTCGATGTGTTCTTCGCAGCCAGCAGTCTAACGGCCGTCTTGCATTCTTTACACGAGGTCACAGACAACGTTGAGGTCTACCACGAGTTCTGGTTTGAGGAGGCGGTGAACCTGGCCACGGCTATGGAAATCCCAGTCAAAATCCCAAGGCTGTTTCTTAGGAAACAGCAGGCAATCGAAACGTTGGAAATACAGGCAGAGTCGTTCTTCAAAGAGTACCTTACCCTTCCGGTCATGGAGTACGTCACTCAGGAAGTCAAGGAGATCTTCTCGGACAACCATCTCAAAGCTCTCAGGTGCCTTTCACTGGTTCCAGCAGTTATGGGCCAGATGAAGTTTAATACATCTGAGGAGGCGCATGCAGAAGTGTTCAGGAACGACCTTCCCCAGCCGGACACGCTGCCCGCAGAACTGCACTGCTGGAGGATCAAGTGGAAGCACAGGGGGAAGGAAGTGACTCTGCCATGCACCATCCACGAGACGCTGCATCACTCGGACGTCAAGTTCTTCCCGAATGTCAACGCGTTCCTAAAAATTCTGGCCTCTTTGCCAGTGTTGAAGCATGGTGGCGGTCAAGGCGAGATTGGTCAGAAACGCTTGCAGGCTTACCTTTTGGACACACCGGTCAGCCACAGGTCAAAGAACTTGGCGGTGCTAAACATCAACTACCACGTAAAAATGGATTTAGAGGAAATGGTGGAACGTTATATTAAAAGTTATCCAGAGGATGAAATCGATTGAGAAATTTCACCAGTTCATAGACTTAGCACGTAGCCTGTGAGTCCAGTTTTGGAAATCTTGTCTAAAGACATCAAtaaaatttgttatttttgtaattgcCATGTTTTTGCATTTATATCATTTGATTGGTGTTGCAATGTTTATACTGCTGTACGCGTTTATACTGTTGTAACAGTTGTGTTGAATCTTGTCTTCTTGACTGTTGACTGGTCTCAAATGTGATGATGAATGATCATACTTCATCTAatttaaagtgtaaataaaaagattctgtattttaatatacatcTTAAAGGATAATCAAATTCCTTA

Function

symbol description
thap12 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in negative regulation of cell population proliferation and signal transduction. Predicted to be located in nucleus.

NR:

description
PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260529.3 True 2722 mRNA 0.46 5 19233343 19237928

Neighbor

gene id symbol gene type direction distance location
LOC103041420 NA coding downstream 2434 19217372 ~ 19230909 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding downstream 25995 19191856 ~ 19207348 (-)
LOC103023129 phldb1,LOC108277892 coding downstream 176606 18888019 ~ 19056737 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding downstream 395120 18833424 ~ 18838223 (-)
pou2af1 NA coding downstream 470590 18735401 ~ 18762753 (-)
trnap-cgg NA coding upstream 978 19238906 ~ 19238977 (-)
LOC103042959 LOC108435292 coding upstream 47051 19284979 ~ 19312628 (-)
LOC103024090 NA coding upstream 121857 19359785 ~ 19370144 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding upstream 145136 19383064 ~ 19397085 (-)
LOC103024404 NA coding upstream 253907 19491835 ~ 19505349 (-)
G11720 NA non-coding downstream 112184 19117942 ~ 19121159 (-)
G11712 NA non-coding downstream 139299 19091508 ~ 19094044 (-)
G11608 NA non-coding downstream 301182 18879117 ~ 18932161 (-)
G11605 NA non-coding downstream 331096 18884146 ~ 18902247 (-)
G11619 NA non-coding downstream 408420 18824703 ~ 18824923 (-)
G11742 NA non-coding upstream 28510 19266438 ~ 19266734 (-)
G11747 NA non-coding upstream 137303 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 153375 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 215465 19453393 ~ 19475044 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding upstream 293461 19531389 ~ 19532500 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 121771 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 2879509 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3228624 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3330910 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3946608 15285676 ~ 15286735 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 3828 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 548053 19785981 ~ 19802323 (-)
G11917 NA other upstream 760512 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1737154 20975082 ~ 20975154 (-)
G12767 NA other upstream 2755879 21993807 ~ 21994751 (-)

Expression


Co-expression Network