LOC103042512 (zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640)


Basic Information

Item Value
gene id LOC103042512
gene name zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 17237374 ~ 17512950 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601224.2
CTGACTGGGTCCTGCGCCGCTTTACCGCCTGTAGGCGACAGAGGGGCTGTGCTGGAGGAGCCGCGGCGCTGTACGATACCGCGAGCCGCCGGCGCAGACCGAGCCTATAAAACGCCCACCGCTCTCTACTACACTACAGCGCACAGACATGTCGTGCCTGCTCGCGCTGCGACGCGTCGTGCCGCGAGGACCTTTCCCACGCGCGCTTCGCTGCGAGGATGTACACCTGGATGGGATTTGATTGGTCGGCGGCGGGTACGGGATTTCTGGAGATGCTGATGTTGGACGGATTCTGCTCTCGAGTACTGGAGCGCGCCCGAAGTGACACGCGCTGAGATATTCGCCCCACCTGGGAACGGAAAGGGAAGGGCACGCTGACGGGGACGCACGAGGAGGGAGTATTTTATGATTAGAAGAGAGATTAAAACGGGAAATAAAATTGCGCgtcttgtaaaataaaaaacggaaGGAagattttacaatttttttaattgatttttttcttcttcttttttttttgcgattATCGGACAGTCTGATTGGAACTACCACCGGTTTGTCCGCGCGCTCGAGCTTCAAACTCCGCGCTGCGTGGCTGAGCGGCAGGCTGAAGGGGGGACGCGCGAGCAGCCGCTGCGCTCCGGCCGGAGGAGTTCGGACCAACAGCACTTTAGCGCTACTCTGTTTCTGGGGAGCGCTGTCCTTGGTCTTCTGCTTTGGGGTCGATCTAAACGGGATCCTCTACTTGCGCGCGCGCCCTGATATTGTCCACAGTCCAGTTTGACGGATTAGGACCACTGGAATCACTGGGACCACTGGGATCATTGGAATCGTCCAACTTCTTCTTGAAGAAAAAGGTAGATGGAGCTGCAGGGGCAGGAGGGCGTGGCCACTCGGCTCTGAGAGCTACCATCGCTTGGTGTTCCAGCACATCATCCCACAACTCTGTCTGCTGCCCAGCCCACATGTAGCAGCCCACCTCCACGCCTCCGCCGCTCCCTCACCGCCAGGGGGTCTTCATGAGCttcttcagccaatcacattcctcACTGAGTTTCCAGGAGCACTGAGGGATGGAGCGATTGATCTTCTCGCTGCTGGTTCTGGCGGTGTCTGCCTCAGGACAGCTCTGCCCCAAGCGCTGCATGTGCCAAAACCTGTCACCGTCCCTCGCCATCCTCTGTGCCAAGACGGGCTTGCTCTTCGTGCCCACGGTCATCGACCGGCGGACTGTGGAGCTTCGCCTCACCGAGAACTTCATCACGGCGGTGCGGAGGCGGGACTTTGCCAACATGACGAGCCTCCTGCACCTCACACTGTCCCGCAACACCATCAGCCAGATCATGCCTTACACCTTCGCTGACCTCAAACGACTGCGGGCGCTGCACTTGGACAGCAACCGCCTCAGCGTGGTCACCGACGACCACTTCCGGGGTCTCACCAACCTTAGGCATCTTATTCTCGCCAACAATCAGCTCCATAACATCTCGCCGCATGCTTTTGATGACTTTTTGGGGACGCTGGAAGATCTGGACCTGTCGTACAACAACCTTGTGGACATCCCGTGGGAAACCATCGGAAGACTCACCAATGTAAACACTCTCAATATGGACCATAACCTTATCGAGCACGTTCCTTTAGGTGTCTTTTCCAACCTGCACAAGCTAGCTCGTCTGGACATGACGTCCAATAAACTGAAGAAAATTCCTCCCGACCCTTTGTTTCTTAGGATTCCAGTCTATGCCAAGTCCAAGGGCTCGCCACTGTCGTCGCTGGTTCTTAGCTTTGGAGGAAACCCTCTGCACTGTAACTGTGAGCTCCTCTGGCTGAGGAGGCTAACGAGGGAGGACGATCTGGAGACTTGCGCCTCGCCTCCGGATCTTACCGCAAAGTACTTCTGGACAATCCCCGAGGAAGAGTTCATCTGTGATCCACCTGTGATTACTAGGAGGTCGCCAAAGACCTTCGCGATGGAAGGCCAGCCCGCCAGCTTGAAATGCAAAGCCAACGGCGACCCAGACCCGGACATACACTGGATCTCTCCGGAGGGTCGCCTGATCTCCAACACTTCTCGCACTCTCACCTTCAGCAATGGCAGCCTGGAGATTAACATCACCTCTCTGAAGGATACGGGAGTGTTCACCTGTATTGCGTCGAATGCCGCCGGGGAGTCTACGGGCACTGTGGAACTGGTGGTCAACCCGCTTCCTCACCTGGCTAACAGCACCAACCGAGTCCGGGAGCCCGATCCCGGACCATCTGATATTCTGACGTCTGCCAAGTCCACCTCGTCGTCTACCAATGACACGAGGACTCAGGAGAAGAAGGCGGTACTTGCGGAGCTTACTGCCAACTCGGCCCTTATCAGGTGGCCTTCACAACAGCAATTCCCTGGAATCAGGATGTACCAGATTCAGTACAACAGCACATCGGACGACACCTTGGTCTACAGGATGATCCCGTCCACAAGTCAGGACTTCCTGGTGAGGGACCTGGTGTCGGGGCGAGAGTACGATCTCTGCGTTCTGGCCGTTTACGATGACAGCATGACCTCGCTGACGGCCACGCGGCAGGTGGGCTGCGTCACGTTCGTCACCGACACCGAGTACAGCCAGTGCCAGTCACTCCGCAGCCACTTCCTGGGCGGCACCATGATCATCATCATTGGGGGCATCATCGTGGCAGCTGTCCTGgtcttcatcatcatcctcatgaTTCGTTATAAAGTCTACAGCCAGCAGGCGGGAGAGACGGGGAAAGGAATGGCCATGACCAACGTTCGCTCACAGACCAACGGAGGCCAGGCGACCGGACAGGTTCCCCGCTCCACCTCCAAGGTCACGGAGGGGCAGGAGCAGGGGGCGGGGTCAGCAGGGGGCGCGGGGGCGCAACCTCCTGCCCTCAAAGACTCTGTAGCCATGGCTCTGGTGGTGGACTGCGAGAAAGGAATGGTCAGCTTAGAGCCGAGTAGTGAAGGCGTTATGTCGCCCACACAGAAGCGCCTCTCCCGGACTTGCGTAGAGGTCAAACGGCGACCTTCGCTGTCCACTAATGAAGGGACGGCGATAGTGGACATATCGGGAAACACGACAGGCCCGCCGGTCAGCGAGGAGAAGAGGGCTCAGCGGGACTGGAGCGACTTTAAAATTTGATGACTCCTTCTGCTGTCCCACGAGAGGCAGCCATCAACCCTGAAAAAACTCTCTAGGTCACCAGTTATCAGGGAGAACTGAACGATGGTATAATTtgtcaaaaaataagaaaaaaaaataaaaaaataaa

Function

symbol description
zgc:172282 Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of presynaptic active zone membrane.

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601224.2 True 3282 mRNA 0.56 6 17237374 17512950

Neighbor

gene id symbol gene type direction distance location
LOC111194193 NA coding downstream 169319 17066396 ~ 17068055 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding downstream 474269 16693422 ~ 16763105 (-)
ccdc43 ccdc43 coding downstream 800249 16428104 ~ 16437125 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding downstream 828881 16405951 ~ 16408493 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 951481 16275677 ~ 16285893 (-)
LOC111194274 NA coding upstream 582089 18095039 ~ 18096516 (-)
LOC111194212 NA coding upstream 713154 18226104 ~ 18229347 (-)
mos mos coding upstream 724362 18237312 ~ 18238566 (-)
mrpl28 mrpl28,LOC107659942 coding upstream 753443 18266393 ~ 18274248 (-)
cul5 cul5,cul5a,LOC107714978,LOC107582587,LOC107554266 coding upstream 766208 18279158 ~ 18296062 (-)
G11179 NA non-coding downstream 183734 17052636 ~ 17053640 (-)
G11162 NA non-coding downstream 347876 16889047 ~ 16889498 (-)
G11157 NA non-coding downstream 372592 16864328 ~ 16864782 (-)
G11155 NA non-coding downstream 394370 16842718 ~ 16843004 (-)
G11153 NA non-coding downstream 397416 16834242 ~ 16839958 (-)
G11256 NA non-coding upstream 19084 17532034 ~ 17532269 (-)
G11258 NA non-coding upstream 66940 17579890 ~ 17580168 (-)
G11276 NA non-coding upstream 116728 17629678 ~ 17630170 (-)
G11285 NA non-coding upstream 174693 17687643 ~ 17691087 (-)
G11297 NA non-coding upstream 261268 17774218 ~ 17774679 (-)
LOC103036671 LOC108427400 other downstream 883540 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 1232655 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 1334941 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 1950639 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 1958937 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 1595763 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 1728806 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 2273031 19785981 ~ 19802323 (-)
G11917 NA other upstream 2485490 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 3462132 20975082 ~ 20975154 (-)

Expression


Co-expression Network