LOC103027967 (LOC108434915)


Basic Information

Item Value
gene id LOC103027967
gene name LOC108434915
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3144487 ~ 3160693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601611.2
GACCAAGAAAGACTGTTCCTTTAAccagccttttttattttattatggttAATCTTGATGAGTAGATATGTGAAAAgttctcttttttactcttaaAGCCACATTTTGGAACATTCTGGAACATTTACAGATCAGCAGGCACAGCTAAAGAGACTGGACCCTCTCTCTGTACTGGTTGACCCTCAGGTCTGTGGAGGATGTGGCTGCTGTTagtctgtgtgttgtgttgtgtgctgCTTCTGGGATCCGCTTTATTCATCAGAAGAAAGCTATGGAGTGACAGTGTGTTCTCTGAGGAGTGTTTAAGGCCTCCAGCTCCACTTGTGATGGACCAAAAGCAAAGAGATGAGGTTCTGAAGCAAGGTTTCCGTAGAGACCGTGTTCCTGCAGATCTGGATGCTGTGGTGGTGGGCAGTGGTATCGGGGGTCTGACAGTAGCTGCAGTTTTGGCTAAAGCTGGGAAGaaggtgctggtgctggagcagcatgaCCAGGCTGGAGGATGCTGCCACACCTTCCAAAAGCAAGGCTTTGAGTTTGACGTAGGTATCCACTACTTGGGTCAGCTTCATGAGAACAGTCTGCTGCGGGTGGTCCTGGAGCAGATCACTGAGGGTCAGCTGCAGTTCGCCCCGCTGGAGCAACACTTTGACACCGTTCTGTTGGGTCGTGGTTCGGAACGTAAGACATTCCATATTCACTCTGGAAAACAGGAGATGAGAGACAACCTGAAGAGACAGTTCCCTGATGATGCACACGCTGTGGACCAGCTGATGAGCCTGATGAAGGAATCTTctaaacacactcctctgctggCGAGTCTGAAGATGATGCCCCTCTGGCTGGTGAGGGCTCTGATaaagctgaagctgctgggTCTTATCTCACGCATATTCAGCCTCGCCTCCACCAGCCACTCTGACATGATGTCCAAACTGACCCGGAATAAAGACCTGATGGCCCTCTCTTCCTACTTATTCTATGGAGTGCCCCCTAAAGACTCCAGCTTTCTCATTAATGCTCTTCTTCTGCATCACTATAAACGAGGGGCATATTACCCTCGAGGAGGGGCCAGTGAGTTCGCCTTCCACATCATACCGGTCATCCGGAAGGCAGGGGGCGCTGTTCTGGTACGAGCTCCGGTTCAGCGTGTCCTGGTTAATGCAGAGGGCAGTGCTTATGGTGTGACTGTGAGGAAGGGTCAGGAGGAACTGGAGGTGCTGGCTCCTGTGGTGATCTCAGACGCAGGAATCTTTAACACTTTTCAGAAGTTTTTACCCAAAGAAATACAAACTAAATCAGAGATCCAGTCGTGGCTGGGTTTGGTCCGGCATGGAATGGGCTCCTTCCTGGTGTTTGTGGGTCTGGATGGAAGTAAAGAAGAGCTTGGCATCGTTTCCACCAACTTCTGGATGTACAAGAACAACGACATGGACCAGCTGATGGAGCAATACAGTTCTCTGAGTCGAGAGGAAGTGGTCGGCAACATCCCCATGATGTTCATCACATTCCCCTCAGCTAAAGACCCAACTTCCAGCATCCGTCACCCAGGGAAGTCCTGTATGACCCTGCTGACCATGGCCAGGTTTGAGTGGTTTGAGGAGTGGAAGGACTCACAGACCAGCAGGAGAGGACCTGACTATGAGGATCTGAAGATGAGCATGGCCAAAGAGCTGCTGGACTGGGCTTTAGAAATCTTCCCCCAGCTCCACGACAAAGTAGTGTTTATGGACGCTGCGACTCCTCTCTCCAACATGCACTATCTTGGTTCACCGTGTGGAGAAATGTACGGAGCAGAGCACAACTTGGCTCGCTTCAGCCCGGAGGTTGTGGCCAAAATACGCCCTGAAACACCTGTAAAGGGACTTTACCTCACAGGTCAGGATGTGTTCTGTAACGGGATGGCTGGAGCTCTACATGGCGGTCTGCTCTGCGCCTCGGCTCTCCTCAGCCCTAGAGTCTATGTGGACCTTCTGCAACTGAAGAAGaaactgaagcagaagaagaacagGAAACAGGCATGAACCTCGGACTGTAAAGACTGAattttcagtcaaaaataaaaggaaaatattaaataaaggattttataacaaaaaaaa

Function

NR:

description
PREDICTED: putative all-trans-retinol 13,14-reductase

GO: NA

KEGG:

id description
K09835 crtISO, crtH; prolycopene isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601611.2 True 2102 mRNA 0.50 11 3144487 3160693

Neighbor

gene id symbol gene type direction distance location
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding upstream 8286 3106191 ~ 3136201 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding upstream 42490 3065275 ~ 3101997 (+)
LOC103026461 LOC103026461 coding upstream 169119 2974013 ~ 2975368 (+)
LOC111193073 LOC108412732 coding upstream 225650 2903075 ~ 2918837 (+)
LOC111193070 NA coding upstream 242128 2887621 ~ 2902359 (+)
LOC103029856 cacng2a,cacng2,LOC107680886,LOC107561356,LOC107687643,LOC107732897,LOC107729558,LOC108434911 coding downstream 138645 3299338 ~ 3423252 (+)
ifi35 NA coding downstream 412549 3573242 ~ 3587765 (+)
LOC111194267 LOC101882592,LOC106911506,LOC107698541,LOC107722802 coding downstream 467994 3628687 ~ 3644274 (+)
LOC103039250 LOC108434931,LOC108278793 coding downstream 481440 3642133 ~ 3656619 (+)
LOC103042028 NA coding downstream 579742 3740435 ~ 3779695 (+)
G7492 NA non-coding upstream 109 3140081 ~ 3144378 (+)
G7485 NA non-coding upstream 7693 3075725 ~ 3136794 (+)
LOC111194151 NA non-coding upstream 124979 3019118 ~ 3019508 (+)
G7466 NA non-coding upstream 166048 2978240 ~ 2978439 (+)
G7465 NA non-coding upstream 166313 2977850 ~ 2978174 (+)
G7518 NA non-coding downstream 2440 3163133 ~ 3171573 (+)
G7526 NA non-coding downstream 27621 3188314 ~ 3192875 (+)
G7531 NA non-coding downstream 98501 3259194 ~ 3263791 (+)
G7587 NA non-coding downstream 234902 3395595 ~ 3397290 (+)
G7603 rpl27,LOC106601555 non-coding downstream 333678 3494371 ~ 3497856 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 302273 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 586143 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1063946 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 1096924 2039387 ~ 2047563 (+)
G7109 NA other upstream 1799056 1340206 ~ 1345431 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 288528 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 763592 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1592103 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 2024841 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 2171372 5332065 ~ 5339089 (+)

Expression


Co-expression Network