LOC103038450 (LOC108427385,LOC100528069,LOC108427383,LOC108427382)


Basic Information

Item Value
gene id LOC103038450
gene name LOC108427385,LOC100528069,LOC108427383,LOC108427382
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15711815 ~ 15713440 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604340.2
CTCGCAGTTGATTGGCTGGCTGCGCTGTCGGTTTGCTGCggggaaaatataaatacagaggACAAAGAGCTCTAACCTCACAGCTTTGGGAAGACTTACAAGGAGTTCTTGCTTCAACAGTGATTGAACGGAACTTCTTCCTCGTCCCGCACCATTCCTTTGACTTCGACGACCGTCGTatagatttttattattgtacgTTTTGATAATAAAAAGGAGAAAATCAGCCGAAATGGAGAACTCTCAGGTCCGCCAGAACTACCACCGCGACTGCGAGGCTGCCATCAACAGGATGGTCAACATGGAGCTCTTCGCCTCTTACACCTACACTTCCATGGCCTACTACTTCTCTCGGGATGATGTAGCCCTTGAAGGTTTTGCCCACTTCTTCAAGGAGAACAGCCATGAGGAACAAGAACATGCAGAGAAGCTCCTCTCCTTCCAGAACAAGAGAGGTGGACGTATCTTCCTCCAGGATATCAAGAAACCTGAGCGTGATGAGTGGGGAACTGGACTGGAGGCCATGCAGTGTGCTTTGCAGCTGGAGAAAAACGTGAACCAGGCTCTGCTGGACCTGCACAAGATTGCCTCTGAGAAGGGTGACCCTCATCTGTGTGACTTCCTGGAGACCCACTACCTCAATGAGCAGGTGGAGGCCATCAAGAAGCTGGGTGACCACATCACCAACCTGACCAAGATGGATGCCGGCAACAACAGGATGGCCGAATACCTGTTCGACAAGCACACCCTGGGGGGCAAAAGCTAAACCTGACCCGAGTCTTCGCCCCTTGCTTGCACAGTCCACCTATGTTCAAATTCGTACTAAAATGTTCTAATTCTGCATGAGTGTTTGAGACAAGAGTTTAAGCTGTTGAATGGAAACATCATAGTGAGTTCCATGTTGTAAGTGTTGATGGCCAAGTTTTGTGCCTCTGAATGTAAATGCTGCTTGACTTCAGTCATGACTGAATCTGATTAATAAACCTTTTGAGCTGAA

Function

NR:

description
PREDICTED: ferritin, middle subunit

GO: NA

KEGG:

id description
K00522 FTH1; ferritin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604340.2 True 997 mRNA 0.48 4 15711815 15713440

Neighbor

gene id symbol gene type direction distance location
LOC103044149 LOC108427384,LOC108427383,LOC100528069,LOC108427382 coding downstream 6008 15700494 ~ 15705807 (-)
LOC103029096 LOC108427383,LOC108427382,LOC108427385,LOC100528069 coding downstream 28300 15681200 ~ 15683515 (-)
LOC103029400 LOC108427383,LOC108427382,LOC100528069,LOC108427385 coding downstream 38194 15671756 ~ 15673621 (-)
LOC103027827 syt5a,LOC108427381,LOC107658481,LOC107583026,LOC107730742,LOC107548337 coding downstream 46444 15648284 ~ 15665371 (-)
ap2a1 ap2a1,LOC103373570,LOC104937940,LOC103131521 coding downstream 442010 15228919 ~ 15269805 (-)
aldh16a1 aldh16a1 coding upstream 9545 15722985 ~ 15738813 (-)
LOC103031937 NA coding upstream 196951 15910391 ~ 15928693 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding upstream 223082 15936522 ~ 15942544 (-)
snrnp70 snrnp70,LOC106583923 coding upstream 239404 15952844 ~ 15964476 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding upstream 562237 16275677 ~ 16285893 (-)
G10962 NA non-coding downstream 22610 15668875 ~ 15689205 (-)
G10811 NA non-coding downstream 431887 15279453 ~ 15279928 (-)
LOC111194139 NA non-coding downstream 622687 15087871 ~ 15089128 (-)
G10782 polr3d non-coding downstream 691700 15019291 ~ 15020115 (-)
G10654 NA non-coding downstream 940197 14771330 ~ 14771618 (-)
G10989 NA non-coding upstream 176633 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 229917 15943357 ~ 15943893 (-)
G11000 NA non-coding upstream 237494 15950934 ~ 15951171 (-)
G11008 NA non-coding upstream 293495 16006935 ~ 16007794 (-)
G11013 NA non-coding upstream 306188 16019628 ~ 16020852 (-)
LOC111188178 NA other downstream 425080 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 433378 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 730246 14960832 ~ 14981569 (-)
G10767 NA other downstream 787856 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 914172 14788070 ~ 14797643 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 45316 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 265797 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 608138 16321578 ~ 16353834 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 3395273 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 3528316 19241756 ~ 19273854 (-)

Expression


Co-expression Network