LOC103030662 (LOC108436499)


Basic Information

Item Value
gene id LOC103030662
gene name LOC108436499
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21496598 ~ 21511206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604411.2
GCAGTGGAGTGGAAGCACCAGCTCTGGTTTCTGTGTCCTCAGTGAGGAGAGGGAGCTGGAGGCGGAGGCTGAAGAGGTGGAGCCCTGAACTCAACATGTCTCAGGACTGGGGGATCTGCCGCTTCTtGCCTGTACTGATTGTACTGGTCGTAGTCTTCAGTGTAAATGGATATACAGACGATCCACTTCTCGAATGCTTGCAAGACCCTGACTATGAGGAGCTTTATAAGATAATGAATGAGGGTCTTCCCCCTACAAAGACCCCTCACAGTGTGGGGATCATCGGTGCAGGAATCGCTGGACTCACTGCAGCTAAGATACTGGAGGATGCTGGACATAAGGTTACAATCATAGAAGCTAGTGATCATATAGGTGGAAGAATCCAGACCTACAGGATGAAGAAGGAGGGCTGGTACGCTGAACTTGGTGCCATGAGGATCCCATGGTTCCACAGGATCCTCATGTCATTTGTGGCAAAGATGGGCCTGAAACTGGATCCTTTCATTGAAGAAAACATTAACACTTACTATCACGTCAACGGTTTGCTTGAAAAAACCTACAGAGTGAAGGACAATCCCGATGTGCTGAACTACTCCGTAAACGAACACGAGAAGGGGAAATCAGCCAGTCAGCTGTTTGATATGGCGTTGTGGAAGATTAAAGATGATGTGAAGAGGTACGGATGCAGTAAGACGATGGCGAAGTATGATTCATATTCTGTTAAGGAGTATTTAGTAAAGGAGGGTAATCTGAGCCGAGAAGCTGTTCGTATGATTGGAGACATACTCAACGAGAACAGCTTCTTCTACACTGGTCTCACAGAGACACTCTACATACAGTCCGATATCAACGATAATACTAAGTATTTTGAGATTCCAGGTGGCATGGATCACATACCCAGAAAATTTTATGAAGTACTCAATGCGACAATTCTGCTCAGATCAAAGGTCAAACGCATCACTCAAACCGAGAGTAATGTGACGGTTTCATTTCAAGACTGGCGAAACCTCTCCGCTTTGACCAACTTCACTTTCGACTACGTTCTGGTGACGGCTACAGCCAAAGCTTCACTCTTCATTGATTTCCAGCCTCCGCTATCAGTCCGGAAGATGGAGGCTCTGCGCTCGGTGCACTACGCCAGCTCCACCAAGGTCGTGCTGAGCTTCAGTGAGAGGTTCTGGGAGAAACAAGGCATCAAGGGTGGAAGAAGCATCACAGATATGCCTTCACGCTTCATTTACTACCCCAGCCACAGCTTTCCTGGAACAGGGGGCGCCCTTTTGGCTTCATACACCTGCTCTGATGATTCCACGCTCTTCCAGGGGGTGCCGGATGATGAGCTGATGGCCATGGTGCTTAATGACTTGGTGAAGATCCATGGGGAGGGGATCCGGCAGCTCTGTACTGGAGGTGTTGTAAAGAAATGGTCTCTGGATCCTTACAGCCATGGAGCGTTCGCCATCTTCACTCCCTACCAGGAGAGTCACTACTCTAAAGATCTGTTCCAGAAAGAGGGGAGGATTCATTTCGCTGGAGAGCACACAGCCATGCCACACGGCTGGATTGAGACGGCCATGAAGTCTGCTCTCAGAGCTGCTAAGAACATTAATAGTATTGAAGAATGAAGACGAGACTGAATAAAAATTGTTTTCACATTGCTGCTTTATAACAGcgaacattttacatttcatcaaatcaaatcaaattgatTTATATAGAGCTTTTAACAAGACTCACAAtcgggggacccatcctcctttggtcgAAACTGCACGTTAAATGTTGAGTAAAGTTCACTATACAGCCACATAGGTCTGTTTTGTTCAGGTGTACTgacataataatattaatagtaataatagtaataggtAATAGTAATACAAATACTACTGACTACTAAAAACTAatgattagaataaaaaaatgctagttttagcttttatttgtttttttattaacactgattttaaaaatacCATAAGGGCCTTAATATTGAAAGACAGCCATGTCTGCATTTTGCCATTTCTGCCACACAGTGATCTGTTGAGGCTGCATTTCGTTcagctagtttttttttttctttttttttacatttcatacatATGTAAGACTGTATTCTGTGCATTTACTACAGTTTAAGactatttaaaagttttatatgtaaataaaaagtacTAGTAAAAGTGTGGGTAGGATAGAGTAATGACAAAtatagtaattaagtaatttaggTTTGCTGTGTAATGTTTTTCTACCTTTTtatgtatatacatttaagCTAGTTTGTATAAATTCCTTTTATACGTTTTACAGACAATTTTAACTTGGTAGAAAATGTAGCTACACATTTCACTTAAACTGACTGATTTTGACTGACTattgtgcaaatgcacacattttGGTTGCTAACCAGcacatgttaaataaaaa

Function

NR:

description
PREDICTED: L-amino-acid oxidase-like

GO: NA

KEGG:

id description
K03334 IL4I1; L-amino-acid oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604411.2 True 2430 mRNA 0.42 8 21496598 21511206

Neighbor

gene id symbol gene type direction distance location
LOC103030984 NA coding downstream 5476 21483571 ~ 21491122 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding downstream 14194 21474412 ~ 21482404 (-)
bco2 LOC108436497 coding downstream 31166 21457131 ~ 21465432 (-)
sorl1 sorl1,LOC107717255 coding downstream 46403 21317501 ~ 21450195 (-)
LOC103030049 NA coding downstream 277501 21213233 ~ 21219097 (-)
LOC103034230 NA coding upstream 6801 21518007 ~ 21530745 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding upstream 98948 21610154 ~ 21699039 (-)
LOC107197401 NA coding upstream 195007 21706213 ~ 21720284 (-)
LOC103032573 NA coding upstream 236214 21747420 ~ 21752895 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding upstream 473228 21984434 ~ 22058836 (-)
LOC111193576 NA non-coding downstream 179893 21312672 ~ 21316705 (-)
G12203 NA non-coding downstream 534839 20960778 ~ 20961759 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding downstream 567381 20840206 ~ 20929217 (-)
G12120 NA non-coding downstream 741311 20728643 ~ 20755287 (-)
G12118 NA non-coding downstream 764678 20720642 ~ 20731920 (-)
G12400 NA non-coding upstream 21274 21532480 ~ 21538280 (-)
G12405 NA non-coding upstream 58752 21569958 ~ 21570232 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding upstream 63752 21574958 ~ 21578572 (-)
G12396 NA non-coding upstream 70356 21581562 ~ 21599012 (-)
G12739 NA non-coding upstream 174006 21685212 ~ 21688855 (-)
trnak-cuu NA other downstream 521444 20975082 ~ 20975154 (-)
G11917 NA other downstream 1414156 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1694275 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2222744 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2385026 19108713 ~ 19111572 (-)
G12767 NA other upstream 482601 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 2028051 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2273265 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2392977 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3539754 25050960 ~ 25056101 (-)

Expression


Co-expression Network