LOC103032573


Basic Information

Item Value
gene id LOC103032573
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21747420 ~ 21752895 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604417.2
cttgacagagtgagaaaaaagaacattttcttcacagaaagaaagaataaaaaaaagaaatcaaacatgctgctgcagtttgtgaTTTTGGCCGCATCTCTGGCGACTGCAACCGAAGCATTCCCAGTTCCTCAGGACACGGCGAGCGGAGAAGTTCTGTGGACCGTGCAGGAGGAAATTGAGAATCTGGCTTCTGATAAAGCTGAACGCAGCAAGGGATTCAAtggGATGTGGAAGACCCACGTTGTCAGCACTGATCTATACTCTCCAGACGCTCAGAACCCCATGGCGGCCGAGTTGAAGCGTAAGCTGAGTCAGGAGTCCGAGCGTCTACGAGCTCGTCTCAGACAGGAGCTTCTGGACCTGAGACAGAGGCTATCTCCGTACCCCTCTCACCCACAGCTCACCCCAGCCAACATCCGCGAGCTCCTGGCTCCCTTCACCCAGAAGCTCCAGAGAACCCTGGACTCCAACACCCAGGAGCTCTGCGGTCAGCTCAGCCTGAGCCTCCAGGGCCTCCAGCCTGACGGACCTTTAACCTACAGAGAAGCAGTGCTGAAGATCAGTCAGGCTCTGGACGAGAGTCACCCGAAAAGGACCGCCGCCTTCGAGGACTTCAAGACCAAGGCGTTTGAGGCGGTGGAGGAGGACCACGACGGCAGCAAGAAGGAGCTGTGGGAGGAGGTGACGGCCAGACTGGGCCAGGAGATCGTTTCCTTCAGCCTGGAGGTTCAGGGGAAAGTGGCCACGCTGAAAGTCGCTCTCGCCGGCCTCCTGACTTCAGCAGAACCGGCGAGAACCGAAGCCGAATCCAAGGTTCTCCAGTTCTGCCAGAGATCCTCGGCTCAGAACCAGAAGTTCATCGCTAATTTAGATCAGCAGATCGCCAGCCTGGACGAGAAACATCACGTCGACCCGTCCAGTCACGTCAATATCGAATCCATACAGGAGGATTTCTCCACCAGACTGAGCGCACTGCTCGCAGACATCGTGCACACTCTGAACTAGAGAAGAACCgacaccagaaccagaaccacaactactgtaatgtactgtaaatagATATCAGAGTAATTGTACCTGACGGCCGGAAACTGACGTATTTTACCCCCTCTTTTCTGCTGTCCTACTGTATTAGTTCTCCCTTAAATTCCctatattggtaa
>XM_015604418.2
acttgacagagtgagaaaaaagaacattttcttcacagaaagaaagaataaaaaaaagaaatcaaacatgctgctgcagtttgtgaTTTTGGCCGCATCTCTGGCGACTGCAACCGCATTCCCAGTTCCTCAGGACACGGCGAGCGGAGAAGTTCTGTGGACCGTGCAGGAGGAAATTGAGAATCTGGCTTCTGATAAAGCTGAACGCAGCAAGGGATTCAAtggGATGTGGAAGACCCACGTTGTCAGCACTGATCTATACTCTCCAGACGCTCAGAACCCCATGGCGGCCGAGTTGAAGCGTAAGCTGAGTCAGGAGTCCGAGCGTCTACGAGCTCGTCTCAGACAGGAGCTTCTGGACCTGAGACAGAGGCTATCTCCGTACCCCTCTCACCCACAGCTCACCCCAGCCAACATCCGCGAGCTCCTGGCTCCCTTCACCCAGAAGCTCCAGAGAACCCTGGACTCCAACACCCAGGAGCTCTGCGGTCAGCTCAGCCTGAGCCTCCAGGGCCTCCAGCCTGACGGACCTTTAACCTACAGAGAAGCAGTGCTGAAGATCAGTCAGGCTCTGGACGAGAGTCACCCGAAAAGGACCGCCGCCTTCGAGGACTTCAAGACCAAGGCGTTTGAGGCGGTGGAGGAGGACCACGACGGCAGCAAGAAGGAGCTGTGGGAGGAGGTGACGGCCAGACTGGGCCAGGAGATCGTTTCCTTCAGCCTGGAGGTTCAGGGGAAAGTGGCCACGCTGAAAGTCGCTCTCGCCGGCCTCCTGACTTCAGCAGAACCGGCGAGAACCGAAGCCGAATCCAAGGTTCTCCAGTTCTGCCAGAGATCCTCGGCTCAGAACCAGAAGTTCATCGCTAATTTAGATCAGCAGATCGCCAGCCTGGACGAGAAACATCACGTCGACCCGTCCAGTCACGTCAATATCGAATCCATACAGGAGGATTTCTCCACCAGACTGAGCGCACTGCTCGCAGACATCGTGCACACTCTGAACTAGAGAAGAACCgacaccagaaccagaaccacaactactgtaatgtactgtaaatagATATCAGAGTAATTGTACCTGACGGCCGGAAACTGACGTATTTTACCCCCTCTTTTCTGCTGTCCTACTGTATTAGTTCTCCCTTAAATTCCctatattggtaa

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604417.2 True 1166 mRNA 0.53 3 21747420 21752894
XM_015604418.2 False 1164 mRNA 0.53 3 21747420 21752895

Neighbor

gene id symbol gene type direction distance location
LOC107197401 NA coding downstream 27136 21706213 ~ 21720284 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 48381 21610154 ~ 21699039 (-)
LOC103034230 NA coding downstream 216675 21518007 ~ 21530745 (-)
LOC103030662 LOC108436499 coding downstream 236214 21496598 ~ 21511206 (-)
LOC103030984 NA coding downstream 256298 21483571 ~ 21491122 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding upstream 231539 21984434 ~ 22058836 (-)
scn3b NA coding upstream 388875 22141770 ~ 22164569 (-)
LOC103032877 NA coding upstream 426521 22179416 ~ 22191537 (-)
LOC103037608 LOC108277452 coding upstream 452167 22205062 ~ 22247459 (-)
LOC111194282 LOC108277600 coding upstream 506024 22258919 ~ 22269228 (-)
G12736 NA non-coding downstream 41572 21704259 ~ 21705848 (-)
G12740 NA non-coding downstream 52626 21694370 ~ 21694794 (-)
G12739 NA non-coding downstream 58565 21685212 ~ 21688855 (-)
G12396 NA non-coding downstream 148408 21581562 ~ 21599012 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding downstream 168848 21574958 ~ 21578572 (-)
G12746 NA non-coding upstream 1776 21754671 ~ 21755463 (-)
G12749 NA non-coding upstream 45074 21797969 ~ 21852060 (-)
G12768 NA non-coding upstream 184890 21937785 ~ 21967799 (-)
G12769 NA non-coding upstream 224446 21977341 ~ 21982608 (-)
G12782 NA non-coding upstream 237826 21990721 ~ 21991991 (-)
trnak-cuu NA other downstream 772266 20975082 ~ 20975154 (-)
G11917 NA other downstream 1664978 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1945097 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2473566 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2635848 19108713 ~ 19111572 (-)
G12767 NA other upstream 240912 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 1786362 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2031576 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2151288 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3298065 25050960 ~ 25056101 (-)

Expression


Co-expression Network