socs1 (socs1)


Basic Information

Item Value
gene id socs1
gene name socs1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29878041 ~ 29880914 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604861.2
GAGCGGCGGCGGAGCTCGcgcacatcacacacactcacgctcaAGCACACGCTTAAACACACACCGCGGAGCAGCGCGGGTCTATGGCCTTTgagaatcagcagcagcagcgggctgtggagtgtgtgtgtagcagcagcagcaccgcgGTTCTGGATCAGGTTCCCCGGCTCTCTGCTCACCGTCTGCCCGCACAGAGACTCCTCTCACCGACCCTGCACGCCTCCTCTAGATGACGCCTCCTCCTTAATGAGGAACGCTATGGAAGACCACACAGGCTGGTCTTCCCTGTAGGATGGTAGCGCACAGTGCAGTGGAAGATACTTCAGGCACAGCGGATCGCAGAGCACAGAGGTCAAGGCCCCACCAGCACCCCAGCCCCAGGCCAGACACCCAGACCCACTTCCCCTCCTTCAGGAGCAACGCCGACTTCGAGACCATCAAAGAGACCACCTCCATGCTGGAGGAGAGCGGCTTCTACTGGGGACCCATGACTGTGGATGAGGCCCACAGCAAGCTGAAGAACGAGTCCGAAGGAACGTACTTGATCCGAGACAGCCAGCAGAAGGACGTGTTCTTCACGCTGAGCTACAGGGCTTCCTCCGGGCCCGCCAGCATCCGGATTACCTTCAAGAACTCTCGTTTCAGCCTGGCCGGGAGCAAGGAATCCTTCGACTCCCTTTTCAAGCTGCTGGAACACTACACCAGCTCGCCCAAGAAGAGCCTGGTGCGTCCCTACCGCAAGGTGCGGGTGCAGTCCCTGCAGCAGCTCTGCCGCAGGCAGGTTGTCGAGACATGCGGCGGGCAGGCGTCCGTGGACAGCATCCCCGTGAACCCCATCCTGAAGGACTTCCTGCGCTCTTTCCCGTTTCGGCTGTGAGGTCTGAAAAAAAACCTGTGGACTCGTACAGCGCATTAACGCACAGCTGGGATATGCACATGCTTGAAATACTTGATGGACTCTTTGCGGTCCGGTGCCAATGCCACTGCCACTGCCACCGCCACTGTGCCAAGCGGGCACCTTGTAGCACGGTTGCGCAAGCAAGACTTGAACACTCCACACCTACTTTGAATGTTTACAACTACCTTAAATGTTTACACTATACAGGGAGCTCTGCTTCCTGTGACTCTAATTTTTTTGCCATGCAAAAATATCGAATATTTTTATACCAGTATTTTTATATgagtaataaatatatttgtaaacttTTCAAAACA

Function

symbol description
socs1 Enables insulin-like growth factor receptor binding activity and protein kinase binding activity. Involved in negative regulation of tyrosine phosphorylation of STAT protein and positive regulation of regulatory T cell differentiation. Located in cytoplasmic ribonucleoprotein granule and nucleoplasm. Implicated in ovarian carcinoma; prostate cancer; and urinary bladder cancer. Biomarker of ductal carcinoma in situ; human immunodeficiency virus infectious disease; and invasive ductal carcinoma.

NR:

description
suppressor of cytokine signaling 1

GO:

id name namespace
GO:0046426 negative regulation of receptor signaling pathway via JAK-STAT biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process

KEGG:

id description
K04694 SOCS1, JAB; suppressor of cytokine signaling 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604861.2 True 1218 mRNA 0.56 2 29878041 29880914

Neighbor

gene id symbol gene type direction distance location
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 294779 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 882936 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 934951 28934626 ~ 28943090 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding downstream 944273 28905061 ~ 28933768 (-)
eci1 NA coding downstream 1048527 28821968 ~ 28829514 (-)
tmc5 tmc5 coding upstream 61509 29942423 ~ 29960792 (-)
LOC103032739 NA coding upstream 1001190 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 1056372 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 1065851 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 1075279 30956193 ~ 30962532 (-)
G14578 NA non-coding downstream 15478 29835317 ~ 29862563 (-)
G14567 NA non-coding downstream 104945 29768906 ~ 29773096 (-)
G14534 NA non-coding downstream 266567 29561798 ~ 29611474 (-)
G14541 NA non-coding downstream 277747 29593804 ~ 29600294 (-)
G14526 NA non-coding downstream 455186 29405159 ~ 29422855 (-)
G14620 NA non-coding upstream 157570 30038484 ~ 30038708 (-)
G14660 NA non-coding upstream 264540 30145454 ~ 30229401 (-)
G14670 xylt1,LOC108439755,LOC107567884,LOC107733871,LOC107729195 non-coding upstream 336909 30217823 ~ 30221528 (-)
G14672 NA non-coding upstream 377504 30258418 ~ 30258877 (-)
G14694 NA non-coding upstream 543158 30424072 ~ 30424287 (-)
dexi dexi,LOC107590611 other downstream 116789 29757687 ~ 29761252 (-)
emp2 emp2 other downstream 234738 29613486 ~ 29643303 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 1081583 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 2839295 27023495 ~ 27038746 (-)
G14113 NA other downstream 2975328 26899005 ~ 26902713 (-)
LOC111193878 NA other upstream 7885 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 380104 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 793146 30674060 ~ 30725921 (-)
LOC103045124 NA other upstream 1008692 30889606 ~ 30892648 (-)
G14781 LOC107602351 other upstream 1033996 30914910 ~ 30923249 (-)

Expression


Co-expression Network