LOC111193070


Basic Information

Item Value
gene id LOC111193070
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 2887621 ~ 2902359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671967.1
CGCGCGTTGATGACATCATGTACACGCGACTGTGTTGACGGAGCCGAGCAGGTCGGAGAGACGctgttgtgtatttttgttgtgattaaagAGTTTAAACCAGCTTTAATATCGAGCTGTACCCGAGCAAACCCGCCCTCAGAGCGGAGAATAAAACTTACACAGGCTTCTACTGAAGGAGGAGCAAAGATGGTGTTTTACTGCTGCGCTTATAActgtaaaaacaacacaaaggACAAGAGCCTCACTTTCCACAGCTTCCCTTTGGGCAACCCTTCGTTGCTTAAAAAATGGCTGAGGAACATGAGGTGGAAAGACTGGTCTCCTGAggaatacagtaaaatatgctCCAATCACTTTGAGAGCAAGTGTTACAGAGTCGTGAATGGCACCCGAAGACTACTTCACACCTGGGCAGTTCCCACCATTTTCTCTTTTCCTGGCCATCTTCAGAACCAGAAGaAAAAGATTGACCCCAGGAGTAGAAGGGCGTTGggaacTGTGGATGAATCTGTCTTCGAGCTGCCTTCAAAACGATCAAAACGCTCCAACATACAGCCTGTACCAGTTCAGCGTTTTCCCGTACAACAGTTCCAGAAATCACAGCCATCAAAGCCTTCACAGCCTTCACAGCAATTACAGCCATCACAGCAATCACAGGTGTCCAACTTACAGAAACCACCAGAGCCCAGTAATGAGCCAGAATCTGTTCAAGTACCTACTCCCTCACAGTCTTCAAGCCCAAGCCTGGGGGAAGCTGATAACAAGTCGTGTACCTGGACAATTCTAGGAGATGAATCAGTGGATAGAAGCATGACCATGCCCAGCTTCTTTCACAGTGGCTACTGTTTGCCCAGGAGTTTTTGCTGGGATGGAGATGATGAGTTAAATATTATGCCACATGTTGTTCGCGGAATCCCAGGAAAAACAAAGCTTCGTATTATTGAGattAAAGAAAGATGGGAGTGGCTTGGTCTGGATATCAGAGGGCCGTTTCCAATCACAACACACAAGCACACTCACGTCATGACCCTGACGGACTACTACTCTAAATGGGTGGAGATCTTTCCCCTGACACAGAATAAAACCAGTGATGCTGCAGCATGTCTGGCAGAAGCCATCCTTCAGATGGGATATCCACTAGGAGTTCTCTCACGACTTCCTAAACACCTGCTCTTAGTAATGAATCGTGAtctgaaaaaacatttaaaggttGACGCATGCTCACTGGTCATTCATCATCGCCAGACTGGGTACCTGGACTTGGTCACTGAGGCGCTCCTTAATGAgatgGTGGATGGGCTAATTAAAGAATACCCACGCACCTGGCACATCCACCTGCCTGCTGCCTCCTTGCGCCTCTGCTGTAAACAACACCCCACCACAGGGAAGAAGCCTTTTACAGTGATGTACAGCAGCGGACCTCCAGCCTTCAGAGCTCCCAGAGAACTGCCtTTTAGCAACAGTGAGATTCGGCAGAGCTCCTTCATCATTCCACACATTGAAGCCGCCAAAGGAAACAaaggaaacaaagaaaacactcctgTTGCTGGGTCTGCTGAGTCAGAGATGAATATAGACAATACAGAAGCCACACCATCACTAACATTAATTCCAGAAGGAAATGTGGAAGTGGATTCCTTGAActattaatagaataaaacctGAGGAAGGTTTAAAACAAACCGATGGACATTTAGAGCGGGACAATTAAGCACATTTAACTAcaatattaacatgtttttcCTGCGGTAATCGGATCATCATGGCTTCTTTTGACCACATAAAACACAGGATGTGACCAGATTATAAAAAGGTGAAATCCTTCACAAACATTCAGAAATGGAGCTCAAATAAAAGAGAATGTGTTTTCTGTGCCCACACACAATGATATAAATGCTGCAAGATGTCTTCACAAATGAGGCTGAATATTTGATATTGTATAATCTAGAATACACAGTTAGTTGCAGGTAGGAGGAGTGCTATTGTAAATACAATGTAAACAGCATGTGTTGATTTGCTGATTCAGGctttaaaatagatataaacaccctataaaattgtaaaaaaaaaaaaaagatgtttgtttttctgtgctttttgtatttctgtAGAATAATCTTGTTGCTTTCAGGTCACTGAATCCATTAAAATTCTCTATTTTTAAAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K23206 THAP5_8; THAP domain-containing protein 5/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671967.1 True 2170 mRNA 0.43 12 2887621 2902359

Neighbor

gene id symbol gene type direction distance location
LOC111194262 NA coding upstream 391665 2495303 ~ 2495956 (+)
LOC111194261 NA coding upstream 392539 2492574 ~ 2495082 (+)
LOC103036218 NA coding upstream 644107 2230650 ~ 2243514 (+)
LOC103039045 znf207,LOC108444040,LOC108278632 coding upstream 664353 2213921 ~ 2223268 (+)
LOC103039361 slc25a23b,LOC108444036,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC108274688 coding upstream 683042 2160815 ~ 2204579 (+)
LOC111193073 LOC108412732 coding downstream 716 2903075 ~ 2918837 (+)
LOC103026461 LOC103026461 coding downstream 71654 2974013 ~ 2975368 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding downstream 162916 3065275 ~ 3101997 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding downstream 203832 3106191 ~ 3136201 (+)
LOC103027967 LOC108434915 coding downstream 242128 3144487 ~ 3160693 (+)
G7413 NA non-coding upstream 9346 2877604 ~ 2878275 (+)
G7401 NA non-coding upstream 90681 2796709 ~ 2796940 (+)
G7393 NA non-coding upstream 111256 2775576 ~ 2776365 (+)
G7383 NA non-coding upstream 143631 2743700 ~ 2743990 (+)
G7379 NA non-coding upstream 149396 2737873 ~ 2738225 (+)
G7447 NA non-coding downstream 23962 2926321 ~ 2929538 (+)
G7448 NA non-coding downstream 25180 2927539 ~ 2928677 (+)
G7465 NA non-coding downstream 75491 2977850 ~ 2978174 (+)
G7466 NA non-coding downstream 75881 2978240 ~ 2978439 (+)
LOC111194151 NA non-coding downstream 116759 3019118 ~ 3019508 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 45407 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 329277 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 807080 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 840058 2039387 ~ 2047563 (+)
G7109 NA other upstream 1542190 1340206 ~ 1345431 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 546862 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 1021926 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1850437 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 2283175 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 2429706 5332065 ~ 5339089 (+)

Expression


Co-expression Network