CI01000009_10089124_10102162 (WDR3)


Basic Information

Item Value
gene id CI01000009_10089124_10102162
gene name WDR3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10087937 ~ 10102162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10089124_10102162.mRNA
ATGCCGCACAATACTGCTTTAAGGATAGAAAGCCTCTGGTTTGCCATGGGTTTAACTAAGCAGTACCTGCGCTATGTGGCGAGTGCTGTATTCGGGGTGATCGGCAGTCAGAAGGCCAACCTCGTGTTTGTGACCCTCAAGGGTGGTGAGAAGGGTCGATATGTTGCTGTTGGAGCCTGTGAACATGTCTTCATATGGGATGTCCGCAAAGCTGAGAAGGTTCTTATACTTGAAGGTAAAAAGCATGAGGTGACGTACTTGTGTCCCTCTCCTGATGGTGTCCACATAGCAGTGGGTTATGAGGATGGAGGTGTGCGCATCTTTAACCTGCTGAACGGTGAAAGCAACATCTCCTTTAGTGGACACAAATCAGTTGTCTCAGTCATTAGATATGATGCACTGGGCGCTCGTCTTGTCACCGGCTCAAGAGACACAGATGTGATTATGTGGGATATCATCAATGAGTGCGGTCTGTACAGACTCAAAGGACACAAAGATGAAGTCACACAAGTTTTGTTCTTGGAGAACAAAAACCTGCTGATTACAAGCTCCAAGGACAGCTTTGTAAAGTGGTGGGACTTGGGCACACAGCATTGTTTCAAGACCATGGTGGGACATCGCAGTGAGGTATGGGGAATGGTCCTGTTGAACCAGGAAAATAGGTTGCTTACAGGGTCTGCTGACAGTGAGCTCAGAGCCTGGGACATTCAGTACATCGAGGAGAATAACATCAAAGTGTCTTCACAGGGTAAAGAAGTTGGGGAACCACAGGAAAAGAAAGTCAGAACTCTTCTTAAGGATGAGGAGGAAGATAAGGAAGGACTTGATGAAGAGCCAGAAGAACGGATACTCAGCTGTAAGAAAGCCGGTTCTGTTCTGAGGGAAGCCAGAGATAGGGTTGTATCCTTGGTTACAGATGCCAAGGCTAAAGTGCTAGCATGCCATGGCCTGGATGCTACGCTTGAAGTCTTTACTGTACTATCAGAGGAGGAGGTCCAGAAAAAAATGGACAAAAAACTAAAGAGAGCCAAGAAAAAAGCAAAGTCTCAAGAAGGAGGAGAGGATGTACCTGAGCCTGTAGTGGAAAGAAAGTTGAGTGATGAAATCCAAAAACTGGCAAATATAAAAGCGTCATCCAAGATCAGATCAATGGACTGCCTTATGGCTCCTAATGGAGAGATGAAGCTTGCTCTTCTTCTGCAGAATAACACAGTGGAGACTTATACACTGAAGACCACAGAGAAAATAACTACAGGCACTAAAACCTCTCGGCTCACACTGAGTGGTCATCGTACAGATGTCAGAACGCTGGCCTTCAGCTCAGATAACATAGCCATCCTCTCCGCCTCTGGAGAGACCGTCAAGTTGTGGAACAGGTCCACCTTGCAGGTCATTCGTACCATGGGATGTGAATATGCTCTTTGCTCATTATTTGTTCCTGGAGACAGACAGATTATCTTAGGAACGAAGAGTGGGAAGATTCAAATTTTTGACCTGGCTTCAGGAAGCCTTCTAGAGACGACTGATGCACATGATGGAGCTCTTTGGTCCATGTGTCTCTCTCCAGATCAGAGAGGGATTGTAACTGGGGGTGCTGACAAGACTGTGAAATTCTGGGACTTTGAGCTCATAAAGGATCAGGACTCTGGAAAGAACAAGAGACTGACGGTAAAGCATACACGCACCCTGCAGTTAGATGAGGATGTGTTGTGTGTGCGCTACAGTCCTGACCAGAGACTGCTGGCTGTCTCTCTTCTCGACTGTACGGTCAAGATCTTTTACACAGACACACTAAAGTTCTTCTTGTCGCTGTATGGACACAAGCTGCCCGTTCTGTGCCTGGACATTTCACATGACAGCGCTTTAATAGCTACAGGATCAGCAGACAGAAACGTGAAGATATGGGGTTTGGATTTCGGAGACTGTCATCGCTCTATGTTTGCACATGACGACAGTGTCATGTTTCTTCAGTTTGTCCCTAAAACCCATCTGTTCTTCACCGCGGGAAAGGACAGAAGGATCAAGCAGTGGGACGCTGACAAGTTTGAGCACATCCAGACATTGGAGGGTCATCATCGTGAGGTCTGGTGCTTGGCCATCAGCCCCAATGGAGACCACATTGTCTCTTCCTCTCATGATAAGTCTCTCAGGCTGTGGGAGAGAACGAGGGAGCCCATCATCCTGGAGGAGGAGAAGGAAATGGAAAGGGAAGCAGAATTTGAGGAGTCGTTGGCTAAAGGCGATGAACCCGTGGTTCCTGGAGAGACTAAAGGAGAGGCAGAGCATGCTGGGAAGAAGACCATTGAGACCGTGAAAGCTGCCGAGCGAATAATGGAGGCCATTGAGCTCTATAGAGAGGAAAGTAAAAAGCTGGAGGAGCACAGAGCCACTTGTGAAGCAGCAGGGAAGGAGCCCTCTCGATATGTTCTGGAAGTGATGAAGAAGGTTCGGTCCAGTGAGCTAGAGGTGTCTCTGCTGGTGCTGCCGTTCCCCTATGTCCCGGATCTGCTGCAGCTCTTCAATGGTTACGTACAGCAGGGCCTGGAGGTGGAGCTAGTGTGCCGCTGCCTCTTCTTCCTGCTCAGTTCTCTAATTTACCATTTTCCTAGAGTCCATTTTGGTCAAATCACCAGTAATCAGATGCTGCTGTCAGTCATCGATGAGTTACGGACCAACACGATCTCTAAAGTGCGAGAGATCAGGGATGTCCTGGGTTTCAACAGCGCCGGTCTTCAGTTCCTGCAGCGTGAGATCGAGAGCAAAGAGGACGTTATGTTCTTTGCTGATGCCACAGACCGTTTTGAAGAGAAGAAGAGAAAGAGGAGGAAACGTGAAAGAGCCGTGCTTACAATCGCATGAAACAATGACAAAACTGATGGCTTTCAACTGTTATAGCAGACTCCATAGCTTTGTGCTTTTACAATCCTGAAGAAGCATCATGCTGATGTTTTTATAAGTTCATGTGTCATTTGTACCTGTTAAAGTCCATAAAGTTTAATTTCTCCACAAATCAACTCACTGATGCTGTTGTTCTTTAATATCTATGTATCTCTATATATGTATCTATACATATAGAATTATTTATGGTTCAAAACTTCAACCAAATTCATGGCCATTATGATGATACTCTATTTGCATCTATCTTGTACTGTATCTGTATGCACAGCAAAAAATCTTATTTTTGTTTAATTAATTTAAATTAGTTCTGAAATGCTTAAAATGAGAAAAAAACATGCAACAGATTCTATGAAAACATGCTTGTAAATGTAACAACATCGTAAATGTAACCTGGTTTAGGGATGCTAAAATAACAAAACAAACAAAACTAAATAACCTGGCAAGTGGTAACACTTTATTTTTAGTCTTGTTACACGTTACAAGTAGTTGCTATAGTAATTAAAATAAAATGTGCATAATTACATGCAACTAACCCTAAACCACACCATAACCCTATAGTAAGTACATGTAGTTAAAGGGTTAGTTCCCCCAAAAATGAAAAATCTGTCATTAATTACTCTCATGTCGTTCCACACCCGTAAGACCTTCGTTCATCTTTGGAGGACAAAAAATCAAAAAGATATTTTTGATGAAATCCGAGAGTTCTATGACTCGTCCATAGACAGCAATTTAATTACCACTGTCAAGGCCCAGAAAGCTACTAAAGACATGGTTAAAATAGTCCATGTGACTGCAGTGGTTCAACCTTAATTTTATGAAGCGACGAAGATATTGATATTGTCTCGTCACTTCATAAAAGTAAGGTTGAACCACTGCAGTCACATGGACTATTTTAACCATGTCTTTACTACTTTTCTGGACAATGACTGTGGTAATTAAATTGCTGTCTATGGAGGAGATAAACAGCTCTCAGATTTCATCAAAAATACCTTAATTTGTGTTCCAAAGATGAACGACATGAGGGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAGCCCTTTAATTATTATTATTATTACGCTACTTAAATATATAATTACACTGTAAAATGGACACATAAAAAAAAAAAAAAGCTCAATAAA

Function

symbol description
wdr3 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

GO:

id name namespace
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome cellular_component

KEGG:

id description
K14556 DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10089124_10102162.mRNA True 4046 mRNA 0.43 26 10087937 10102162

Neighbor

gene id symbol gene type direction distance location
CI01000009_09908895_09911939 HAO2, HAOX2 coding downstream 175899 9908583 ~ 9912038 (-)
CI01000009_09900049_09906784 KLH13 coding downstream 181153 9899709 ~ 9906784 (-)
CI01000009_09895304_09897877 HSD3B1 coding downstream 189933 9895156 ~ 9898004 (-)
CI01000009_09884586_09891558 PLA1A coding downstream 196379 9884580 ~ 9891558 (-)
CI01000009_09866875_09870401 NA coding downstream 217473 9866565 ~ 9870464 (-)
CI01000009_10137314_10138474 MAN1A2, FAM46C coding upstream 34929 10137091 ~ 10139525 (-)
CI01000009_10149267_10242850 MGC130950, MAN1A2.L, MAN1A2 coding upstream 47105 10149267 ~ 10242850 (-)
CI01000009_10250936_10259244 TRIM45 coding upstream 148734 10250896 ~ 10259244 (-)
CI01000009_10261399_10263994 VTCN1 coding upstream 158438 10260600 ~ 10263994 (-)
CI01000009_10271506_10292564 NA coding upstream 168583 10270745 ~ 10292564 (-)
G57228 NA non-coding downstream 67636 10020081 ~ 10020301 (-)
G57226 NA non-coding downstream 84441 10001161 ~ 10003496 (-)
G57219 NA non-coding downstream 101446 9986073 ~ 9986491 (-)
G57210 NA non-coding downstream 123381 9964330 ~ 9964556 (-)
G57189 NA non-coding downstream 172478 9915188 ~ 9915459 (-)
G57247 NA non-coding upstream 13628 10115790 ~ 10135432 (-)
G57245 NA non-coding upstream 40448 10142610 ~ 10144550 (-)
G57240 NA non-coding upstream 88448 10190610 ~ 10199419 (-)
G57276 NA non-coding upstream 155725 10257887 ~ 10258605 (-)
CI01000009_10297628_10300270 NA non-coding upstream 195466 10297628 ~ 10301102 (-)
CI01000009_08858198_08860555 NA other downstream 1227374 8856310 ~ 8860563 (-)
G55814 NA other downstream 1659925 8425821 ~ 8428012 (-)
G53515 NA other downstream 4582689 5502395 ~ 5505248 (-)
G52828 NA other downstream 5856468 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 6825980 3261038 ~ 3262843 (-)
G59097 NA other upstream 2186055 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 3873226 13975099 ~ 13978614 (-)
G59490 NA other upstream 3931402 14033564 ~ 14037873 (-)
G59811 NA other upstream 4760235 14862397 ~ 14887464 (-)
G59941 NA other upstream 5029942 15132104 ~ 15132503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 misc CM030128.1 CM030128.1 16722073 ~ 16737877 (-)