ifi35


Basic Information

Item Value
gene id ifi35
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3573242 ~ 3587765 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672131.1
TCCTGCGCAGCTCCCTCAGATACAGTAAACGAAAGCGAAACTGAACGCGGCTCAGACTCTCGtttaaactgAGGAGAAACAGCCggagagaagcagcagcagcagcagatttaGCCCGAGTGAAAGGAGAGACTGAACGGAGGATTACCTGCTGTCAAAGATGTCTGATGAGGAATATGAAAAAATTGGAAATGAAGATTTAACCAGCCTTTTCAAGGAGATCAATATGCTCAAGAAGCAGCATGACAGCCTGCTGAGGGAACAGAGGATGCTGTCTGAGGGCAGGGACAGTAACATCAAGTTTACCCAGGAGTTCAAGCAGCGAGCTGTGAAATTGAAGAAGAACCTGGacgaggaggagaagaagagtgAGGACGCAGTGAAGAAGGAGCAGGAGAAGCTAGAAGGTATAAAGCAGGAGAACCGAAAGCTGAAAGAGGAAATCTGGAGTATGGAACAGAAATTGAGGACTATGGACGAAGACAATAAGAGCCTGAGGCAACAGACTGAGGTGTCCACTGCAGTGCCGGAGAAGAAGGTAGTATTTAATGGAGATGTGGCAAATGGAGCTCATGCTTTGAGCTTTGACATGAAACCCCGTATCGTGTTCCCAATGGAGGGAGGAACTGCGCTCATCACCTTCGAGGAAGAAGAAGTGGCTGAAAAGATCCTGGCTCTTAGGGAACATGTGGTGGCTCTGGGGGATTGCTCTATTGCAGTGCAGGCCGAGCCGGTGCGCTTCCTGGTACCTGTTGGAGTGGAGATGGACACTCAGGTGTGCCCGCAGCGTATCCTCGTTTCCGACCTGCCGAAAAAGATGAGTGTGGAAAAGATCCTGGACAAACTGGAGATCCACTTCTCCAAGGGTAGGAACGGAGGAGGGGAGGTGGAGGACATAGATATGCTGGAGGATTCGGGAAACGTGGTCGTCGCCTTCGTAGACAGCACCAttGCTAAAGGCCTCACAGATAAACAGATCCATGAGGTGGAGATAGAAAAAGGCAAGAAACACAAAGTGAAGGTGACTCCCTTCCTCAATGGCAGCATCACACTTCTCAAGACCTGTAACATAACCTGCAAGAAGACGGTGCTGCTGACAGGAATCCCCGACATCATGGAACAGGACAACCTGCAGGACCAGCTGGAGATCCACTTccagaaaacaaacaacagtGGAGGAGAAGTGGATGCAATCATCTACAACCCTCAGGGCAGGAAGACTCTGGCTCTGTTTGAAGAAGATGCTCCTAAAGACGAGTAGGACCAGTGATAAGAAGGTCTGACTTTAGCCAAACTGTGACAACCTATATATATGCTGATCTTTATGAAAGGCTGGAAGTCTTCAATCCtgttgaattttgaattatattGCCCAAAATCATTATTTCTCCTCATATTAATGTATATTGGTAAGTATGATTGATTATTAGACATATGGTGAGTTTTAAATCTGAGACATTTGATCATTGGGTTCTTCAAAAGCAATATATgagtacaataaaatatattaaataaaatatatattaattaggGATGCATTGATATAAACATCTTTGTCCAAAACCAAAAAGAACAATATATTTGTCCAAATACCAAATATGATTTCACTGTTTTTTCACATCCTCAGTGGGACTGGGAATGTGGGTGATGGGTTTCGGGGGCAACCAAGTTCCTCCATGCCCTAGAGTGCTCTTTATATtggaaaaataagatttttgtgggaacatattttttaaatgtgtgtccCTAATAAATGATGGTGATGTACCTCCAGATCGAGAAATGTTTATAGAGTTTCCTAATCAGTGCCCTTCTACCCTTTAAGTAGTAAACGGTAAAACTCAAAAGTGCCCTCTGAGCCAACCCTTCCAGAGAGTGTCTTAAAGGATGCCCTTTTTAGTAGAGAAACTGGGATGTGTTGCCCCacgaacagtctattttcacatcttgcgcctgcacattttaaatagaaaagatgcttagaaatatatctacaccaatGGGCGTGATAGtcttgaaatgaggtgtgttcaggtacatttcagCCATATTGCTATTGTGGcagaggaaaacacaggtgtgcctctgactgatttgaaccctgcCAATGGTCAACTATCCgaagttcattgctatcttggcaacgcaggtgGATCGTGCGACACCTCtattcattacacacacacatggacatgcgtcagtgcacaaacccaacttttatattattttttgcgtaaatgacctgcttgcACAACTTAACGTGAACGCACAGgttagtttcctctgctgaaaacacagaagcactgcaccattaaaatagcaatcttctaaagtcagagcacacctggctcttaaaggtgccacactgattggtttatttcactttacgtgattaattaagagaattagtacatgccttttgcacgttttaaGCCATGCAAGGCATATATCAGCATCGTCAAGATACcaaaacacactgacacgccctaattCAAGTtgcacagtgcacagttgaAGTAACTATCAAtcatatattagtatattagatACTAGGTATTATGTCTTATggcaatatttaaaatgttttaatttctttGTCATTAttcatttgatcatttttctGGTCCAGGCTTAGTTCTAATTAATTCTCATAATCAGACAGTACTGAAAACTGTCAATATGTTAAGCTAATGCTGGAGAGGAGAGGTCTGTGGGAATAGGGatgaaatgtttcttttttttttttttaaacttgatgTTTTACACTCATCTGCACGTGttcagtgcttttcctgatcctATACACCAGTCTTAACGCATACTTGAACTTTCGAGGGTTGAGTCAGGTGAAATGATGAGCTGAGCAGTACAGAATCTGGAGGAATCTGAAATTGGTGCActgataaattgtttttttctgagctgtttGGAGATAATGGACTTGGAGATGTCAGTCAAATGGAGAAAAGAGCAAACCTCATTTATTCATGTACTGTTTATTTTGATTCTGTTTTATGAGCATAAATATGGGGACATTTAGATATAGACGTAAGATAAGAATTGTCAGAATGGATATTAAAATGGCAGTAAATTAAGAATTGATGATGAGCCACCTCATGCATACACATGTATTATATATCAATCTATATTCTTAATAAAGATGTATTATTGACTTACTGTATAATATGATGCACATTACAGTCTTATTCTCGGAGaaaa

Function

NR:

description
interferon-induced 35 kDa protein homolog isoform X1

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672131.1 True 3219 mRNA 0.41 11 3573242 3587765

Neighbor

gene id symbol gene type direction distance location
LOC103029856 cacng2a,cacng2,LOC107680886,LOC107561356,LOC107687643,LOC107732897,LOC107729558,LOC108434911 coding upstream 149990 3299338 ~ 3423252 (+)
LOC103027967 LOC108434915 coding upstream 412549 3144487 ~ 3160693 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding upstream 437041 3106191 ~ 3136201 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding upstream 471245 3065275 ~ 3101997 (+)
LOC103026461 LOC103026461 coding upstream 597874 2974013 ~ 2975368 (+)
LOC111194267 LOC101882592,LOC106911506,LOC107698541,LOC107722802 coding downstream 40922 3628687 ~ 3644274 (+)
LOC103039250 LOC108434931,LOC108278793 coding downstream 54368 3642133 ~ 3656619 (+)
LOC103042028 NA coding downstream 152670 3740435 ~ 3779695 (+)
phb phb,LOC107661032 coding downstream 281644 3869409 ~ 3874948 (+)
znf652 znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758 coding downstream 292765 3880530 ~ 3904749 (+)
G7651 NA non-coding upstream 1003 3566669 ~ 3572239 (+)
G7636 NA non-coding upstream 5437 3526630 ~ 3567805 (+)
G7637 NA non-coding upstream 38149 3533371 ~ 3535093 (+)
G7603 rpl27,LOC106601555 non-coding upstream 75386 3494371 ~ 3497856 (+)
G7587 NA non-coding upstream 175952 3395595 ~ 3397290 (+)
G7656 NA non-coding downstream 24019 3611784 ~ 3612934 (+)
G7661 hsd17b14,dhb14,LOC107561364,LOC107732853 non-coding downstream 30296 3618061 ~ 3621228 (+)
G7663 NA non-coding downstream 39003 3626768 ~ 3627535 (+)
G7664 NA non-coding downstream 39883 3627648 ~ 3627874 (+)
G7665 NA non-coding downstream 40197 3627962 ~ 3628681 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 120576 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 731028 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1014898 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1492701 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 1525679 2039387 ~ 2047563 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 336520 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1165031 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1597769 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1744300 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 2141157 5728922 ~ 5729500 (+)

Expression


Co-expression Network