LOC103033979


Basic Information

Item Value
gene id LOC103033979
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4263799 ~ 4285939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672372.1
gatggcctCAAACAAGGAGAGTGGAAGAAGGACTGAATGGAATAAGTGACATAAAGGAATAAATGAAGATGGAACAAAGTAAGCAGAAGAGGATATGAAGAAGACTCGGCcggctggagtgtgtgtgtacgtctagatgtttatgtatgtgtgtacacgcatgtgtatgtgtgtgtgtggatgtatgAGGTATGAGGCTTCTGCTCCTAAGGCTGCTGGGTGTCCTGTTCATCACCTCCTTCTTCAGTGTGGTGCTCTGGCACTTTCTCAGTAACAGtgctgcaggtcttCATGGTCCACGGTACAGTGAAAGAAAAGCGGCAGGCCCAATTAAGCCGACAACTAGCAGGGCAGTGAAggACAATGCCATTATTGATAGATTGCTGAAATCATATTCACCCAGATGGAAAAGGCGTGAAgcaaatttttcaaaattcagGTCGTTGCTAAGCAGCAGCTGTCATGCCGTATCCAAGGCTGTTGTTACACAGTCTAACACGCCTGTGGGGTCAAAGGTTGTGTATGATGGCGAGAAGACAAAGCCACTGCAGGTGACAAAAGCCCTCTTCAGCACATTTGCCAAGGAGCAACCCTTTGGAAATGCTTCTTGGGATACCTGTGCTGTGGTGGGCAATGGAGGGATCTTGGTGAATAGCAGCTGTGCAGAAAAAATCAACTCTGCAAACCTTGTCATCAGgTGTAATCTTCCTCCATTAGGAAATGGCTATGAGAAAGATGTGGGGAACAAGACAAGTCTGGTTACAGCCAACCCCAGCATCCTCATAGAGAAGTTCAGCGGGCTGATGGAGCGACGGCGTCCGTTTGTGGAGAGCCTGCGTCCTTACGGTGACTCCCTGCTCCTGCTACCGGCCTTCTCCTACAGCCACAACACGCCCGTCTCACTGCGCGCTCTCTATGCACTGGAGGACTTTAATGCCGTTGGACCGCGGCCCGTCTTCTTCAACCCGGAGTACCTCAGCAGCCTGGCCCGCTTCTGGCGTGGGCGTGGCCTCCGCACTGCTCGCCTCAGTACGGGTCTCATCGTGACCAGCCTGGCTTTGGAGCTCTGCACCAACGTCCATCTGTACGGCTTCTGGCCCTTCAGCCTGCACCCACACGGCCGCCAGACAATCACCAATCACTACTACGACAACCGGCAGAGCAAGAAGAACGTGCACTCCATGCCTTCTGAGTTTGAGCACCTTCTGCGGCTCCACGTGAGCGGCGTGATCCAGCTACATCTGGGGGAATGCTCAACGACTGACTTGAACCACACAGAGAAGACCTAGTTTAGGCTGTGGACAAATTGCCTGAGAATATTTTTGGAACCCTTGctaaaaacaacagagagagttaaaaacaagtatttttattaaaggGATAAAAGTACCAAACAGGGAGCAAAGTGCCAGAACTACAACACCCAGATCAAGCAAGAGCTGTGGTTGTCCAAGTCTGCCTTTTTACTGTTATGAAGAAGAGAGCATCATGGGAGATGTAGTCAGGATGGACTGATTAGCACTGGCTTACTGAACCAGACTACACCTGACTGACAGTCTGGCACTgtagtaaaaagtaattttactttgtaataatatttaaacagtTCAAGGGGTGAAGGAAAGTGTACATATATGGTGTGTAATGGTTCAAGTTGCTGTTTTCACATATGGACTTTCAGGAGTATCAGGTCCGGACATTATTTAGAGGTGCCCTTTCACACATGCAGTGTAAAGCCAGATATTTTAATGTAAGATTCATtcttactacagaaaatattcCACAATGTTTAGGCATGGCTTTAGGCATGCATTACTACCCTGTGATACAGCATGTTTCACTGTGAATTAACTTGCTCTATTCACATTTCAGACCACCTCTAATCGTGGTTTGGATACGATTTGCAAAAATCGGATTTTGTTTTAAGGCTGTCCACACTATCAAAAATTAATCTGGgtacaatataaatacaatctaGACATGCCAAAAATCTGTTTTAGGCTGGCAGTCTAAACATATCATATCCTTGGACATAACCCAGACTAAAAGGGCTGGATACAGACATAAGACTTAATAAACCTGTAAAGATCTAGGTTTCAGTGCATGTGTGAAAGGAGttaatatcaaataaatcaGAAATAATCTAATTCTCTATGGGGAAACAGGAATTCTCTAAGGAAAGtcctagttttagtttttggtcTTAGCTATTTAAACTACCACTCAGGGAAACTGGCCCACACTTTAAAACCGTTGGTCACCAACTTTTCTTATGGAGATCTACCTTCTACCCAAACTTATCCAGCACACCTCAtttatcaaattattttttttaatgattcatttttaccatacaatgaaaaaatgtatttgaactCTCATGGGCTGAAACCTCGTGCTGTGTCGGATAATCATAGTGCCATAAACCTGTCATGAAGTATCACAGAGTaattcagctcagaaaaaaacagtttgtgtCTCAGCTAGCCAGCTGTTAGCAATGCAGCTAACCCTAATGCTATTTTTTGCTTTATAACTATGGTTTTGAGtaacataatatataaaatacaaagattatatcatatcatacatgTGAACTCTTTATCTCTACATTCTGGAGCAGGTAAGTCATTgtgctttgtttatttgtcCTTTTGGAATTTTAAAAAGGTCTacaataaatgcttttaaagtGTAGTTTTGTAcatttgacagtataaatataattataaaagagTATACATTTGATTTAGGTCAGTTATATCATTACAGTAGTGGAAAAGGTAGAAAAATGAATGAAGacctgtgaaaaaaaatcaaatgcctttttttttttttgcccaaaaccttatattttcatacatcccTTGGTGAGGTTGATTAGGGTTGGAGCTGACATTTGCAAGAACGCAGAACTCCTGGTCTAAGGATGGTGACCactgttttaaagtgtttaaccTGGACTGAAGTAGAGAATTTGAATACAGTATTTAACATTTGATTTGCAGACATGTTTAATGTTTCATATGGAAATGTGAGTTGAAGTAGGGGCTTGATAGGTTACGTTCACATTaacaggctgaagtgactcaaattagattttttttgctcaatgtggctcagatcagattttttcatggttgtgtgaacgtgccaaatctgttttttttttgtttgtttgtttttttttcccctttcatatgtggtcctaaatcagatatgtatctgATCTATgcacatgcgacatgaatgtgaacgatcAAATCGAAATTCATGCCTCTTTTTGCTTTTAAGGATGTGCTACATGCTTCTCtttcgtacccacacatctcttggtgcagctgtgcagctatagctgtaaaaacagcaaaagcaaactgcCTGGTCTTTTTTCACGTCCTcgaccagctgtttgctgtttctccactccagcaaaagatgcggcttgtaatgtgaacatagccttagtcCCAGTGTTAAATTTAGCTAATTCTGCATAAA

Function

GO: NA

KEGG:

id description
K06615 SIAT8F; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672372.1 True 3501 mRNA 0.42 7 4263799 4285939

Neighbor

gene id symbol gene type direction distance location
rpl19 rpl19,LOC103032189,LOC108413899,LOC107084780,LOC105890759,LOC101075516,LOC107378566,LOC107567432 coding upstream 13399 4244176 ~ 4250400 (+)
trnac-gca_4 NA coding upstream 112397 4151331 ~ 4151402 (+)
trnac-gca_3 NA coding upstream 112687 4151041 ~ 4151112 (+)
trnac-gca_2 NA coding upstream 115141 4148587 ~ 4148658 (+)
trnac-gca_1 NA coding upstream 117092 4146636 ~ 4146707 (+)
LOC103026143 LOC108412542,LOC107690312,LOC107567496,LOC107567486,LOC107754252,LOC107731081,LOC107653457 coding downstream 136815 4422754 ~ 4445870 (+)
LOC103024696 LOC108413965,LOC107568576,LOC107690307,LOC108260811 coding downstream 217296 4503235 ~ 4527298 (+)
LOC103024379 slc17a7a,LOC108413988,LOC108260804,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding downstream 243708 4529647 ~ 4563173 (+)
LOC103023536 LOC103023536,LOC108413997,LOC108258948,LOC103392975,LOC107653435,LOC104930345,LOC105894964 coding downstream 280757 4566696 ~ 4579096 (+)
LOC103022388 gys1,LOC108414029,LOC107653402,LOC107731036,LOC107690304 coding downstream 319112 4605051 ~ 4629707 (+)
G7808 NA non-coding upstream 149154 4114128 ~ 4114645 (+)
G7821 NA non-coding upstream 150182 4108636 ~ 4113617 (+)
G7819 NA non-coding upstream 162266 4101084 ~ 4101533 (+)
G7810 vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678 non-coding upstream 168799 4071830 ~ 4095000 (+)
G7847 NA non-coding downstream 64902 4350841 ~ 4351202 (+)
G7942 NA non-coding downstream 74856 4360795 ~ 4361018 (+)
G7943 eftud2,LOC106607257,LOC107690313,LOC107731090,LOC107653466 non-coding downstream 77243 4363182 ~ 4390313 (+)
LOC111194157 NA non-coding downstream 117029 4402968 ~ 4407798 (+)
G7969 NA non-coding downstream 201241 4487180 ~ 4489198 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 334557 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 811133 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1421585 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1705455 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 2183258 2050283 ~ 2080541 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 466857 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 899595 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1046126 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1442983 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 2071463 6357402 ~ 6376704 (+)

Expression


Co-expression Network