LOC103021882 (LOC108412577)


Basic Information

Item Value
gene id LOC103021882
gene name LOC108412577
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4639227 ~ 4646126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672488.1
TGGTTTCTCATGTCCTAATGGAGAACCACTTTCTGCGAATGAGCTGCTCTATACTGTACTAAACTCCTGCATCAGCAGAAAATCAACACATTAGCCCTCCAAGAGCAATCTGGCGCCATCAAGCGAGCGGAGGGGGCGCGGCTGCCCGGGCTCTGTGAGCCGCTCGCTGGCTGGAGCTCAGAGCTCAGTTCCCGGGAGTCACCGCGGCTGAAGCTGGCCGGCTCTGTGTGTGGATCAGTTCAACACTGAGGAGCTGCTGAAGAAACTGCAGAGAGGAGTGTTGAGGAGAGATTTATGATGAAGAATTGAGGGTCTAAACTACAGGTTATATATGTCATGTTCGTGAGGCAGCTTGCACAGCTCGCCTCTCTCTGATGGTCCAGCATCCCAGTGCCCTCCCGGGTAGGAGATGCCAGTGTCCTGCCATGCTGCACCCAGTGGGCTTCCTGTTTCTGCGACTGGTGCTGCCTTGCCTGCTGCTCCGAGTGCTGGGCCTGGGTTCTGGGTCACGGCAGCTGATGTCCGGATGTCCTGAAAGCTGCTACTGCTCAGAGAGCCGGGACGGTGGCCTGGCGGTGCGCTGCAGCAACATGAACCTACTGGCTGTGCCCCGTGATCTACCCAACCAGACGCGACGCCTCTACTTGGACTACAACCTGCTGGTCAGCGTGCCTGTTGACTCTTTTTTGGGGCTCCCCCTTCTGGCTGAGCTGGACCTCTCGCACAACAGACTGATGCAGCTGGAGCCCGGAGCCTTCCACGGCCTGGCTGACTCTCTTACCAGCCTAGACCTTTCCTTCAACCTGCTGGAGACTATGGACCCAGAGGCTCTGGGGGAACTGCGGGCACAGGCCAACCTCACACACAACCCCTGGATGTGCGACTGCCGCCTGCAGGTGGCCATGCCTCAGCTGCAGCTGGAGCCGTCCTCCCTGGCCGGAGTGGTGTGTAATGGCTCGGAGCCAGAGGACGTGGGGGCCCGCGGTGTGCCGTTTGTGCTGGTAGCTGCAGATCTGGACCTCTGCGCTGCCCTCAAGAGGACCACTGACGTCGCCATGCTGGTGACTATGTTTGGCTGGTTTACGATGGTCATCTCTTACCTGGTTTACTACGTGAGGCACAACCGAGAGGACGCTCGGCGCCACCTGGAGTATCTCAAGTCACTGCCCAACAAGCAGGGCTGGACAGATGAGGTGTCGACCCTTAGCACTATGGTTTAAAACGTGTGACTGGATTTAAAACTCGTTTACCTGGCGCTTTGATGATGCATATTTTTATACTAACATGCCAAAAGGGTGTCACCTCTAGaaatggcttgggaatgcctaCACCTGTAtaatttgtgaggtgttatcttgtgagtgaggctgaggACCGAAAAAAAACTCCACAAGGTCTCAAGGCATTATCATCAatagtggacagcacagtgggtggtaaagATGGTAAAgtgactggtggtgtctggctggaattgtccatgcaaacagacaagcaactctcaCATAATATAAAACCACATTCACATTCAACAGTGCAGGAGAACCCACACATTATTTAGCTTCTATTGGACAtgacaaatgaaaaacaaaaatagagatgATATAACTGGAAAAAGGCACAAACaatctttattaaaataaaataataatacataaagtatatacatatatataacatatatatatatatatata

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672488.1 True 1697 mRNA 0.52 3 4639227 4646126

Neighbor

gene id symbol gene type direction distance location
LOC103023220 LOC108412582 coding upstream 989 4635868 ~ 4638238 (+)
LOC103022388 gys1,LOC108414029,LOC107653402,LOC107731036,LOC107690304 coding upstream 9520 4605051 ~ 4629707 (+)
LOC103023536 LOC103023536,LOC108413997,LOC108258948,LOC103392975,LOC107653435,LOC104930345,LOC105894964 coding upstream 60131 4566696 ~ 4579096 (+)
LOC103024379 slc17a7a,LOC108413988,LOC108260804,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding upstream 76054 4529647 ~ 4563173 (+)
LOC103024696 LOC108413965,LOC107568576,LOC107690307,LOC108260811 coding upstream 111929 4503235 ~ 4527298 (+)
LOC103021349 LOC103021349,LOC108444243 coding downstream 59323 4705449 ~ 4732324 (+)
cavin1 NA coding downstream 160208 4806334 ~ 4837015 (+)
stat3 stat3,LOC107653351,LOC107731003,LOC107754129 coding downstream 208252 4854378 ~ 4908161 (+)
LOC103033010 sta5b,stat5,LOC108444239,LOC106607295,LOC108279147 coding downstream 273347 4919473 ~ 5082727 (+)
kcnh4 kcnh4,LOC107568301 coding downstream 696507 5342633 ~ 5408162 (+)
G7972 NA non-coding upstream 136663 4501524 ~ 4502564 (+)
G7969 NA non-coding upstream 150029 4487180 ~ 4489198 (+)
LOC111194157 NA non-coding upstream 231429 4402968 ~ 4407798 (+)
G7943 eftud2,LOC106607257,LOC107690313,LOC107731090,LOC107653466 non-coding upstream 248914 4363182 ~ 4390313 (+)
G7942 NA non-coding upstream 278209 4360795 ~ 4361018 (+)
G7992 NA non-coding downstream 17988 4664114 ~ 4664365 (+)
G8083 NA non-coding downstream 206741 4852867 ~ 4853066 (+)
G8088 NA non-coding downstream 268338 4914464 ~ 4914910 (+)
G8133 NA non-coding downstream 443502 5089628 ~ 5108793 (+)
G8134 NA non-coding downstream 447835 5093961 ~ 5101259 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 709985 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 1186561 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1797013 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 2080883 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 2558686 2050283 ~ 2080541 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 106670 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 539408 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 685939 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1082796 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 1711276 6357402 ~ 6376704 (+)

Expression


Co-expression Network