Item | Value |
---|---|
gene id | stat3 |
gene name | stat3,LOC107653351,LOC107731003,LOC107754129 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035898.1 |
NCBI id | CM008301.1 |
chromosome length | 34292151 |
location | 4854378 ~ 4908161 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
stat3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; cardiac muscle tissue regeneration; and generation of neurons. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including blastomere; epidermal superficial stratum; head; immature eye; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); hyper IgE recurrent infection syndrome 1; reproductive organ cancer (multiple); and type 2 diabetes mellitus. Orthologous to human STAT3 (signal transducer and activator of transcription 3). |
description |
---|
PREDICTED: signal transducer and activator of transcription 3 isoform X1 |
id | name | namespace |
---|---|---|
GO:0042074 | cell migration involved in gastrulation | biological_process |
GO:0001736 | establishment of planar polarity | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0007259 | receptor signaling pathway via JAK-STAT | biological_process |
GO:0001837 | epithelial to mesenchymal transition | biological_process |
GO:0061026 | cardiac muscle tissue regeneration | biological_process |
GO:0060252 | positive regulation of glial cell proliferation | biological_process |
GO:0030010 | establishment of cell polarity | biological_process |
GO:0008045 | motor neuron axon guidance | biological_process |
GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0005509 | calcium ion binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0004871 | obsolete signal transducer activity | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
id | description |
---|---|
K04692 | STAT3; signal transducer and activator of transcription 3 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_022672525.1 | True | 5227 | mRNA | 0.44 | 24 | 4854378 | 4908161 |
XM_022672532.1 | False | 5167 | mRNA | 0.44 | 23 | 4854378 | 4908161 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
cavin1 | NA | coding | upstream | 17363 | 4806334 ~ 4837015 (+) |
LOC103021349 | LOC103021349,LOC108444243 | coding | upstream | 122054 | 4705449 ~ 4732324 (+) |
LOC103021882 | LOC108412577 | coding | upstream | 208252 | 4639227 ~ 4646126 (+) |
LOC103023220 | LOC108412582 | coding | upstream | 216140 | 4635868 ~ 4638238 (+) |
LOC103022388 | gys1,LOC108414029,LOC107653402,LOC107731036,LOC107690304 | coding | upstream | 224671 | 4605051 ~ 4629707 (+) |
LOC103033010 | sta5b,stat5,LOC108444239,LOC106607295,LOC108279147 | coding | downstream | 11312 | 4919473 ~ 5082727 (+) |
kcnh4 | kcnh4,LOC107568301 | coding | downstream | 434472 | 5342633 ~ 5408162 (+) |
rab5c | rab5c,LOC107690295,LOC104958098 | coding | downstream | 514017 | 5422178 ~ 5450200 (+) |
kat2a | kat2a,LOC107755568,LOC107690294,LOC107687008 | coding | downstream | 544091 | 5452252 ~ 5467730 (+) |
dhx58 | NA | coding | downstream | 566653 | 5474814 ~ 5500346 (+) |
G8083 | NA | non-coding | upstream | 1312 | 4852867 ~ 4853066 (+) |
G7992 | NA | non-coding | upstream | 190013 | 4664114 ~ 4664365 (+) |
G7972 | NA | non-coding | upstream | 351814 | 4501524 ~ 4502564 (+) |
G7969 | NA | non-coding | upstream | 365180 | 4487180 ~ 4489198 (+) |
LOC111194157 | NA | non-coding | upstream | 446580 | 4402968 ~ 4407798 (+) |
G8088 | NA | non-coding | downstream | 6303 | 4914464 ~ 4914910 (+) |
G8133 | NA | non-coding | downstream | 181467 | 5089628 ~ 5108793 (+) |
G8134 | NA | non-coding | downstream | 185800 | 5093961 ~ 5101259 (+) |
G8141 | NA | non-coding | downstream | 209887 | 5118048 ~ 5125168 (+) |
G8155 | NA | non-coding | downstream | 234839 | 5143000 ~ 5143355 (+) |
atp6v0a1 | atp6v0a1,LOC108444241 | other | upstream | 51877 | 4752796 ~ 4802501 (+) |
natd1 | natd1,LOC107745813,LOC107689058,LOC107661164 | other | upstream | 925136 | 3924285 ~ 3929242 (+) |
G7593 | LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 | other | upstream | 1401712 | 3449221 ~ 3452666 (+) |
LOC111193069 | dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 | other | upstream | 2012164 | 2825128 ~ 2842214 (+) |
G7296 | sept9,LOC108411966 | other | upstream | 2296034 | 2530616 ~ 2558344 (+) |
LOC103045997 | si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 | other | downstream | 277373 | 5185534 ~ 5328867 (+) |
hcrt | hcrt | other | downstream | 423904 | 5332065 ~ 5339089 (+) |
G8287 | ttc25,LOC106601019 | other | downstream | 820761 | 5728922 ~ 5729500 (+) |
nmt1 | nmt1,LOC108432052,LOC102778525 | other | downstream | 1449241 | 6357402 ~ 6376704 (+) |
LOC103045148 | LOC108432039 | other | downstream | 1800924 | 6709085 ~ 6734703 (+) |